Bra023610 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra023610 T267958_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RVE1
M00879_2.00
Arabidopsis thaliana
AAATATCT

AGATATTT
PBM
Franco-Zorrilla et al.(2014)
RVE1
0.880 0.935
RVE1
M07128_2.00
Arabidopsis thaliana
NNNWAAATATCTNN

NNAGATATTTWNNN
Dap-seq
OMalley et al.(2016)
RVE1_col_a
0.880 0.935
RVE1
M07129_2.00
Arabidopsis thaliana
NNWAATATCW

WGATATTWNN
Dap-seq
OMalley et al.(2016)
RVE1_colamp_a
0.880 0.935
PK08316.1
M02350_2.00
Cannabis sativa
NNNRWATCNN

NNGATWYNNN
PBM
Weirauch et al.(2014)
pTH9488
0.797 0.848
OS08G0157600
M02330_2.00
Oryza sativa
DNRTATCHN

NDGATAYNH
PBM
Weirauch et al.(2014)
pTH7793
0.788 0.848
LHY
M06997_2.00
Arabidopsis thaliana
NWAAATATCT

AGATATTTWN
Dap-seq
OMalley et al.(2016)
LHY1_col_a
0.779 0.804
LHY
M06998_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LHY1_colamp_a
0.779 0.804
CCA1
M00875_2.00
Arabidopsis thaliana
NDNRWATCN

NGATWYNHN
PBM
Franco-Zorrilla et al.(2014)
CCA1
0.749 0.848
CCA1
M11039_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CCA1_Q5
0.749 0.848
RVE5
M01079_2.00
Arabidopsis thaliana
NWAATATCHN

NDGATATTWN
PBM
Sullivan et al.(2014)
pTH7138
0.734 0.696
RVE5
M07100_2.00
Arabidopsis thaliana
NNAAAATATCT

AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At4g01280_col_a
0.734 0.696
RVE5
M07101_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a
0.734 0.696
RVE7
M01069_2.00
Arabidopsis thaliana
NDHRWATCNN

NNGATWYDHN
PBM
Sullivan et al.(2014)
pTH7081
0.714 0.761
RVE7
M02286_2.00
Arabidopsis thaliana
NDARTATCH

DGATAYTHN
PBM
Weirauch et al.(2014)
pTH7277
0.714 0.761
RVE7L
M07071_2.00
Arabidopsis thaliana
NNNNWAAATATCWNN

NNWGATATTTWNNNN
Dap-seq
OMalley et al.(2016)
AT3G10113_col_a
0.714 0.761
RVE7
M07008_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
EPR1_colamp_a
0.714 0.761
RVE7
M07009_2.00
Arabidopsis thaliana
NWAAATATCTHN

NDAGATATTTWN
Dap-seq
OMalley et al.(2016)
EPR1_col
0.714 0.761
mybG
M02319_2.00
Dictyostelium discoideum
WAATATCT

AGATATTW
PBM
Weirauch et al.(2014)
pTH5362
0.693 0.696
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra023610.1-P Myb 46 91

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

305 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL002079 Aedes aegypti AAEL002079 N 0.000
AALB002019 Anopheles albimanus AALB002019 N 0.000
AARA005043 Anopheles arabiensis AARA005043 N 0.000
ACHR001889 Anopheles christyi ACHR001889 N 0.000
ACUA002940 Anopheles culicifacies ACUA002940 N 0.000
ADAC008437 Anopheles darlingi ADAC008437 N 0.000
ADIR011245 Anopheles dirus ADIR011245 N 0.000
AEPI008198 Anopheles epiroticus AEPI008198 N 0.000
AFAF002703 Anopheles farauti AFAF002703 N 0.000
AFUN015812 Anopheles funestus AFUN015812 N 0.000
AFUN015813 Anopheles funestus AFUN015813 N 0.000
AGAP008084 Anopheles gambiae AGAP008084 N 0.000
AMAM002157 Anopheles maculatus AMAM002157 N 0.000
AMEC008629 Anopheles melas AMEC008629 N 0.000
AMEM005132 Anopheles merus AMEM005132 N 0.000
AMIN006189 Anopheles minimus AMIN006189 N 0.000
AQUA001070 Anopheles quadriannulatus AQUA001070 N 0.000
ASIS015471 Anopheles sinensis ASIS015471 N 0.000
ASTEI01836 Anopheles stephensi ASTEI01836 N 0.000
CPIJ001883 Culex quinquefasciatus CPIJ001883 N 0.000
CpipJ_CPIJ001883 Culex pipiens CpipJ_CPIJ001883 N 0.000
Trf Drosophila melanogaster FBgn0010287 N 0.000
GA20441 Drosophila pseudoobscura FBgn0080436 N 0.000
GF14757 Drosophila ananassae FBgn0091784 N 0.000
GG10512 Drosophila erecta FBgn0102820 N 0.000
GH11614 Drosophila grimshawi FBgn0119094 N 0.000
GI17918 Drosophila mojavensis FBgn0140659 N 0.000
GL24756 Drosophila persimilis FBgn0162344 N 0.000
GM16720 Drosophila sechellia FBgn0171633 N 0.000
GD23502 Drosophila simulans FBgn0194881 N 0.000
GJ17690 Drosophila virilis FBgn0204859 N 0.000
GK15318 Drosophila willistoni FBgn0217323 N 0.000
GE18732 Drosophila yakuba FBgn0236124 N 0.000
LCUP011585 Lucilia cuprina LCUP011585 N 0.000
MCINX013040 Melitaea cinxia MCINX013040 N 0.000
MDOA011496 Musca domestica MDOA011496 N 0.000
NV15957 Nasonia vitripennis NV15957 N 0.000
PPAI007775 Phlebotomus papatasi PPAI007775 N 0.000