Bra029990 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra029990 T268048_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
F3A4.140
M02299_2.00 		Arabidopsis thaliana
YAACBGYY
RRCVGTTR		 PBM
Weirauch et al.(2014)
pTH7112 		0.818 0.903
F3A4.140
M07095_2.00 		Arabidopsis thaliana
TAACBGYHWHNNHNN
NNDNNDWDRCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB77_col_a 		0.818 0.903
F3A4.140
M07096_2.00 		Arabidopsis thaliana
AACCGYAACCSTAWHWWAMV
BKTWWDWTASGGTTRCGGTT		 Dap-seq
OMalley et al.(2016)
MYB77_colamp_a 		0.818 0.903
F3A4.140
M02701_2.00 		Arabidopsis thaliana
SYAACYGYCVHBN
NVDBGRCRGTTRS		 SELEX
Mathelier et al.(2014)
MA0575.1 		0.818 0.903
F3A4.140
M11044_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ATMYB77_01 		0.818 0.903
MYB44
M01082_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH7078 		0.759 0.839
MYB44
M07155_2.00 		Arabidopsis thaliana
HDTAACBGWHW
WDWCVGTTAHD		 Dap-seq
OMalley et al.(2016)
MYB44_colamp_a 		0.759 0.839
MYB44
M07156_2.00 		Arabidopsis thaliana
HAACBRWHWWAACBGHHWH
DWDDCVGTTWWDWYVGTTD		 Dap-seq
OMalley et al.(2016)
MYB44_col 		0.759 0.839
PK28565.1
M02357_2.00 		Cannabis sativa
TAACBGTY
RACVGTTA		 PBM
Weirauch et al.(2014)
pTH9653 		0.703 0.774
AtMYB70
M01071_2.00 		Arabidopsis thaliana
HAACBRHHN
NDDYVGTTD		 PBM
Sullivan et al.(2014)
pTH8588 		0.703 0.763
AtMYB70
M07048_2.00 		Arabidopsis thaliana
YAACBGWHWWAAMN
NKTTWWDWCVGTTR		 Dap-seq
OMalley et al.(2016)
MYB70_col_a 		0.703 0.763
MYB73
M07114_2.00 		Arabidopsis thaliana
TAACBGWHWHW
WDWDWCVGTTA		 Dap-seq
OMalley et al.(2016)
MYB73_col_a 		0.698 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra029990.1-P Myb 6 52
Bra029990.1-P Myb 58 103

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

151 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo1g082480 Brassica oleracea Bo1g082480 I 0.902
MYB77 Arabidopsis lyrata fgenesh2_kg.5__1356__AT3G50060.1 I 0.818
Bo8g079430 Brassica oleracea Bo8g079430 I 0.818
Cagra.1549s0005 Capsella grandiflora Cagra.1549s0005 I 0.818
Thhalv10010581m.g Eutrema salsugineum Thhalv10010581m.g I 0.818
F3A4.140 Arabidopsis thaliana AT3G50060 D 0.818
Carubv10019440m.g Capsella rubella Carubv10019440m.g I 0.818
Bostr.6864s0236 Boechera stricta Bostr.6864s0236 I 0.815
Bra036048 Brassica rapa Bra036048 I 0.795
Bra012910 Brassica rapa Bra012910 I 0.790
Bo7g099180 Brassica oleracea Bo7g099180 I 0.790
Thhalv10004676m.g Eutrema salsugineum Thhalv10004676m.g I 0.776
Cagra.0342s0017 Capsella grandiflora Cagra.0342s0017 I 0.759
Bostr.0568s0154 Boechera stricta Bostr.0568s0154 I 0.759
Bra012149 Brassica rapa Bra012149 I 0.759
ATMYBR1 Arabidopsis lyrata scaffold_803378.1 I 0.759
Carubv10027659m.g Capsella rubella Carubv10027659m.g I 0.759
Bo7g063830 Brassica oleracea Bo7g063830 I 0.759
MYB44 Arabidopsis thaliana AT5G67300 D 0.759
Bo2g167960 Brassica oleracea Bo2g167960 I 0.750
Cucsa.352560 Cucumis sativus Cucsa.352560 I 0.748
evm.TU.supercontig_21.145 Carica papaya evm.TU.supercontig_21.145 I 0.745
PK17282.1 Cannabis sativa PK17282.1 I 0.734
Cla020946 Citrullus lanatus Cla020946 I 0.731
cassava47374.m1 Manihot esculenta cassava47374.m1 I 0.731
TCM_007138 Theobroma cacao TCM_007138 I 0.729
MDP0000463846 Malus domestica MDP0000463846 I 0.728
PRUPE_ppa008979mg Prunus persica PRUPE_ppa008979mg I 0.728
SapurV1A.1934s0020 Salix purpurea SapurV1A.1934s0020 I 0.728
SapurV1A.0919s0160 Salix purpurea SapurV1A.0919s0160 I 0.728
30170.m013698 Ricinus communis 30170.m013698 I 0.728
POPTR_0014s02260 Populus trichocarpa POPTR_0014s02260 I 0.728
Pm005332 Prunus mume Pm005332 I 0.728
GLYMA17G35620 Glycine max GLYMA17G35620 I 0.725
MDP0000275800 Malus domestica MDP0000275800 I 0.724
gene00185-v1.0-hybrid Fragaria vesca gene00185-v1.0-hybrid I 0.723
AMTR_s00006p00225600 Amborella trichopoda AMTR_s00006p00225600 I 0.723
Gorai.010G023500 Gossypium raimondii Gorai.010G023500 I 0.721
Gorai.009G215900 Gossypium raimondii Gorai.009G215900 I 0.720
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I 0.719
GLYMA14G09540 Glycine max GLYMA14G09540 I 0.717
Eucgr.F00002 Eucalyptus grandis Eucgr.F00002 I 0.717
cassava2215.valid.m1 Manihot esculenta cassava2215.valid.m1 I 0.716
GSMUA_Achr1G26140_001 Musa acuminata GSMUA_Achr1G26140_001 I 0.714
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I 0.713
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I 0.713
cassava43120.valid.m1 Manihot esculenta cassava43120.valid.m1 I 0.713
Gorai.005G234900 Gossypium raimondii Gorai.005G234900 I 0.713
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I 0.713
evm.TU.supercontig_6.98 Carica papaya evm.TU.supercontig_6.98 I 0.713
GSMUA_Achr3G13070_001 Musa acuminata GSMUA_Achr3G13070_001 I 0.710
orange1.1g022144m.g Citrus sinensis orange1.1g022144m.g I 0.708
SapurV1A.0597s0060 Salix purpurea SapurV1A.0597s0060 I 0.708
Ciclev10001979m.g Citrus clementina Ciclev10001979m.g I 0.708
SapurV1A.0339s0020 Salix purpurea SapurV1A.0339s0020 I 0.707
Cucsa.395890 Cucumis sativus Cucsa.395890 I 0.704
POPTR_0002s12410 Populus trichocarpa POPTR_0002s12410 I 0.704
SapurV1A.0167s0310 Salix purpurea SapurV1A.0167s0310 I 0.704
Cla022947 Citrullus lanatus Cla022947 I 0.704
Bostr.27895s0157 Boechera stricta Bostr.27895s0157 I 0.703
AtMYB70 Arabidopsis lyrata fgenesh2_kg.4__260__AT2G23290.1 I 0.703
Gorai.007G055600 Gossypium raimondii Gorai.007G055600 I 0.703
29970.m000987 Ricinus communis 29970.m000987 I 0.703
TCM_000696 Theobroma cacao TCM_000696 I 0.703
MDP0000232454 Malus domestica MDP0000232454 I 0.703
PRUPE_ppa008450mg Prunus persica PRUPE_ppa008450mg I 0.703
AtMYB70 Arabidopsis thaliana AT2G23290 D 0.703
PK28565.1 Cannabis sativa PK28565.1 D 0.703
MDP0000196986 Malus domestica MDP0000196986 I 0.703
Thhalv10000438m.g Eutrema salsugineum Thhalv10000438m.g I 0.703
Cucsa.102710 Cucumis sativus Cucsa.102710 I 0.702
Cla014191 Citrullus lanatus Cla014191 I 0.702
GSMUA_Achr9G22600_001 Musa acuminata GSMUA_Achr9G22600_001 I 0.701
VIT_07s0129g01050 Vitis vinifera VIT_07s0129g01050 I 0.701
Cagra.1232s0025 Capsella grandiflora Cagra.1232s0025 I 0.698
MYB73 Arabidopsis thaliana AT4G37260 D 0.698
Bo1g004900 Brassica oleracea Bo1g004900 I 0.698
Bra011749 Brassica rapa Bra011749 I 0.698
Bostr.7867s1585 Boechera stricta Bostr.7867s1585 I 0.698
Carubv10007638m.g Capsella rubella Carubv10007638m.g I 0.698
Thhalv10025742m.g Eutrema salsugineum Thhalv10025742m.g I 0.698
Ca_02182 Cicer arietinum Ca_02182 I 0.696
chr2.CM0250.240.nd Lotus japonicus chr2.CM0250.240.nd I 0.693
VIT_18s0001g09850 Vitis vinifera VIT_18s0001g09850 I 0.693
Lus10030336.g Linum usitatissimum Lus10030336.g I 0.693
MTR_5g016510 Medicago truncatula MTR_5g016510 I 0.693
GLYMA11G05550 Glycine max GLYMA11G05550 I 0.693
CM0528.210.nd Lotus japonicus CM0528.210.nd I 0.693
GLYMA01G39740 Glycine max GLYMA01G39740 I 0.693
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I 0.691
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I 0.691
Bo3g153550 Brassica oleracea Bo3g153550 I 0.691
chr5.CM0096.100.nc Lotus japonicus chr5.CM0096.100.nc I 0.690
GLYMA05G21220 Glycine max GLYMA05G21220 I 0.689
Gorai.012G149000 Gossypium raimondii Gorai.012G149000 I 0.688
orange1.1g021071m.g Citrus sinensis orange1.1g021071m.g I 0.688
Ciclev10026107m.g Citrus clementina Ciclev10026107m.g I 0.688
Aquca_007_00776 Aquilegia coerulea Aquca_007_00776 I 0.688
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I 0.688
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I 0.687
GLYMA04G04490 Glycine max GLYMA04G04490 I 0.687
mgf014089m Mimulus guttatus mgf014089m I 0.687
e_gw1.9.342.1 Physcomitrella patens e_gw1.9.342.1 I 0.685
Cla006872 Citrullus lanatus Cla006872 I 0.684
Aquca_083_00054 Aquilegia coerulea Aquca_083_00054 I 0.684
Lus10010260.g Linum usitatissimum Lus10010260.g I 0.684
Pm021211 Prunus mume Pm021211 I 0.681
PRUPE_ppa023154mg Prunus persica PRUPE_ppa023154mg I 0.681
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I 0.680
GSMUA_Achr3G28230_001 Musa acuminata GSMUA_Achr3G28230_001 I 0.680
Carubv10023692m.g Capsella rubella Carubv10023692m.g I 0.679
GSMUA_Achr8G25220_001 Musa acuminata GSMUA_Achr8G25220_001 I 0.678
Lus10010238.g Linum usitatissimum Lus10010238.g I 0.677
Bra010593 Brassica rapa Bra010593 I 0.677
Bra017813 Brassica rapa Bra017813 I 0.676
gene24027-v1.0-hybrid Fragaria vesca gene24027-v1.0-hybrid I 0.675
GSMUA_AchrUn_randomG01280_001 Musa acuminata GSMUA_AchrUn_randomG01280_001 I 0.675
Bo4g151410 Brassica oleracea Bo4g151410 I 0.675
Gorai.009G276400 Gossypium raimondii Gorai.009G276400 I 0.674
cassava41257.m1 Manihot esculenta cassava41257.m1 I 0.674
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I 0.674
30170.m013927 Ricinus communis 30170.m013927 I 0.669
POPTR_0014s03440 Populus trichocarpa POPTR_0014s03440 I 0.669
MDP0000894463 Malus domestica MDP0000894463 I 0.669
orange1.1g025351m.g Citrus sinensis orange1.1g025351m.g I 0.669
cassava46434.m1 Manihot esculenta cassava46434.m1 I 0.669
SapurV1A.0017s0390 Salix purpurea SapurV1A.0017s0390 I 0.669
PRUPE_ppa010735mg Prunus persica PRUPE_ppa010735mg I 0.669
Gorai.009G208900 Gossypium raimondii Gorai.009G208900 I 0.669
Ciclev10002239m.g Citrus clementina Ciclev10002239m.g I 0.669
evm.TU.supercontig_376.4 Carica papaya evm.TU.supercontig_376.4 I 0.669
Gorai.009G275100 Gossypium raimondii Gorai.009G275100 I 0.669
Lus10032764.g Linum usitatissimum Lus10032764.g I 0.669
GLYMA04G03910 Glycine max GLYMA04G03910 I 0.669
Ca_01522 Cicer arietinum Ca_01522 I 0.669
Pm005220 Prunus mume Pm005220 I 0.669
GLYMA06G04010 Glycine max GLYMA06G04010 I 0.669
OGLUM09G00340 Oryza glumaepatula OGLUM09G00340 I 0.664
OBART09G00310 Oryza barthii OBART09G00310 I 0.664
OB09G10200 Oryza brachyantha OB09G10200 I 0.664
mgf023922m Mimulus guttatus mgf023922m I 0.664
BGIOSGA030245 Oryza indica BGIOSGA030245 I 0.664
OPUNC12G06260 Oryza punctata OPUNC12G06260 I 0.664
OS09G0106700 Oryza sativa OS09G0106700 I 0.664
POPTR_0007s10490 Populus trichocarpa POPTR_0007s10490 I 0.664
OMERI08G05160 Oryza meridionalis OMERI08G05160 I 0.664
ORUFI09G00360 Oryza rufipogon ORUFI09G00360 I 0.664
ORGLA09G0002900 Oryza glaberrima ORGLA09G0002900 I 0.664
ONIVA09G00250 Oryza nivara ONIVA09G00250 I 0.664
GSMUA_Achr1G09750_001 Musa acuminata GSMUA_Achr1G09750_001 I 0.662
GSMUA_Achr4G12950_001 Musa acuminata GSMUA_Achr4G12950_001 I 0.661