Bra033257 (Brassica rapa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 Bra033257 T268074_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK02532.1
M02347_2.00
Cannabis sativa
WAATATCTN

NAGATATTW
PBM
Weirauch et al.(2014)
pTH9579
0.872 0.913
RVE8
M01074_2.00
Arabidopsis thaliana
NNNRWATCNN

NNGATWYNNN
PBM
Sullivan et al.(2014)
pTH7136
0.864 0.891
RVE8
M07069_2.00
Arabidopsis thaliana
NHNWAAATATCT

AGATATTTWNDN
Dap-seq
OMalley et al.(2016)
At3g09600_col_a
0.864 0.891
RVE8
M07070_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a
0.864 0.891
RVE4
M07117_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LCL1_colamp_a
0.864 0.891
RVE4
M07118_2.00
Arabidopsis thaliana
NAAAATATCT

AGATATTTTN
Dap-seq
OMalley et al.(2016)
LCL1_col
0.864 0.891
RVE6
M01081_2.00
Arabidopsis thaliana
AATATCTD

HAGATATT
PBM
Sullivan et al.(2014)
pTH7151
0.862 0.891
RVE6
M07138_2.00
Arabidopsis thaliana
NNAAAATATCT

AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At5g52660_col_a
0.862 0.891
RVE6
M07139_2.00
Arabidopsis thaliana
NNNWAAATATCT

AGATATTTWNNN
Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a
0.862 0.891
mybG
M02319_2.00
Dictyostelium discoideum
WAATATCT

AGATATTW
PBM
Weirauch et al.(2014)
pTH5362
0.842 0.870
RVE5
M01079_2.00
Arabidopsis thaliana
NWAATATCHN

NDGATATTWN
PBM
Sullivan et al.(2014)
pTH7138
0.828 0.935
RVE5
M07100_2.00
Arabidopsis thaliana
NNAAAATATCT

AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At4g01280_col_a
0.828 0.935
RVE5
M07101_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a
0.828 0.935
PK08316.1
M02350_2.00
Cannabis sativa
NNNRWATCNN

NNGATWYNNN
PBM
Weirauch et al.(2014)
pTH9488
0.700 0.674
RVE1
M00879_2.00
Arabidopsis thaliana
AAATATCT

AGATATTT
PBM
Franco-Zorrilla et al.(2014)
RVE1
0.670 0.652
RVE1
M07128_2.00
Arabidopsis thaliana
NNNWAAATATCTNN

NNAGATATTTWNNN
Dap-seq
OMalley et al.(2016)
RVE1_col_a
0.670 0.652
RVE1
M07129_2.00
Arabidopsis thaliana
NNWAATATCW

WGATATTWNN
Dap-seq
OMalley et al.(2016)
RVE1_colamp_a
0.670 0.652
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra033257.1-P Myb 48 93

Links

Other Myb/SANT family TFs
Other Brassica rapa TFs

325 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL011092 Aedes aegypti AAEL011092 N 0.000
ENSAMEG00000012088 Ailuropoda melanoleuca ENSAMEG00000012088 N 0.000
Alligator_sinensis_CCG006007.1 Alligator sinensis Alligator_sinensis_CCG006007.1 N 0.000
Aqu1.222503 Amphimedon queenslandica Aqu1.222503 N 0.000
ENSAPLG00000007715 Anas platyrhynchos ENSAPLG00000007715 N 0.000
KDM5B Anolis carolinensis ENSACAG00000005107 N 0.000
AALB003225 Anopheles albimanus AALB003225 N 0.000
AARA006109 Anopheles arabiensis AARA006109 N 0.000
AATE009040 Anopheles atroparvus AATE009040 N 0.000
ACHR007377 Anopheles christyi ACHR007377 N 0.000
ACOM038290 Anopheles coluzzii ACOM038290 N 0.000
ACUA025224 Anopheles culicifacies ACUA025224 N 0.000
ADAC004659 Anopheles darlingi ADAC004659 N 0.000
ADIR009258 Anopheles dirus ADIR009258 N 0.000
AEPI000432 Anopheles epiroticus AEPI000432 N 0.000
AFAF009884 Anopheles farauti AFAF009884 N 0.000
AFUN008496 Anopheles funestus AFUN008496 N 0.000
AGAP004854 Anopheles gambiae AGAP004854 N 0.000
AMAM014474 Anopheles maculatus AMAM014474 N 0.000
AMEC004492 Anopheles melas AMEC004492 N 0.000
AMEM014063 Anopheles merus AMEM014063 N 0.000
AMIN011637 Anopheles minimus AMIN011637 N 0.000
AQUA000338 Anopheles quadriannulatus AQUA000338 N 0.000
ASTEI05939 Anopheles stephensi ASTEI05939 N 0.000
GB52426 Apis mellifera GB52426 N 0.000
Afo_R005441 Aptenodytes forsteri Afo_R005441 N 0.000
ENSAMXG00000018648 Astyanax mexicanus ENSAMXG00000018648 N 0.000
ENSAMXG00000024732 Astyanax mexicanus ENSAMXG00000024732 N 0.000
ACEP21606 Atta cephalotes ACEP21606 N 0.000
BGIBMGA004558 Bombyx mori BGIBMGA004558 N 0.000
ENSP00000356233-D1 Bos grunniens ENSP00000356233-D1 N 0.000
KDM5B Bos taurus ENSBTAG00000006175 N 0.000
Brh_R004837 Buceros rhinoceros Brh_R004837 N 0.000
KDM5B Callithrix jacchus ENSCJAG00000006050 N 0.000
Aan_R003738 Calypte anna Aan_R003738 N 0.000
Cflo_12071--XP_001122635.1_APIME Camponotus floridanus Cflo_12071--XP_001122635.1_APIME N 0.000
KDM5B Canis familiaris ENSCAFG00000010452 N 0.000
CapteG147496 Capitella teleta CapteG147496 N 0.000
KDM5B Cavia porcellus ENSCPOG00000010644 N 0.000
Cmyd_10020716 Chelonia mydas Cmyd_10020716 N 0.000
ENSCSAG00000014155 Chlorocebus sabaeus ENSCSAG00000014155 N 0.000
KDM5B Choloepus hoffmanni ENSCHOG00000012197 N 0.000
CLEC007177 Cimex lectularius CLEC007177 N 0.000
CGI_10007771 Crassostrea gigas CGI_10007771 N 0.000
CpipJ_CPIJ009184 Culex pipiens CpipJ_CPIJ009184 N 0.000
CPIJ009184 Culex quinquefasciatus CPIJ009184 N 0.000
KGM_20601 Danaus plexippus KGM_20601 N 0.000
kdm5bb Danio rerio ENSDARG00000003098 N 0.000
kdm5ba Danio rerio ENSDARG00000057093 N 0.000
KDM5B Dasypus novemcinctus ENSDNOG00000003205 N 0.000
ECANG7_00151 Echinococcus canadensis ECANG7_00151 N 0.000
KDM5B Echinops telfairi ENSETEG00000018113 N 0.000
KDM5B Equus caballus ENSECAG00000014268 N 0.000
KDM5B Felis catus ENSFCAG00000013102 N 0.000
ENSFALG00000002622 Ficedula albicollis ENSFALG00000002622 N 0.000
ENSGMOG00000001476 Gadus morhua ENSGMOG00000001476 N 0.000
ENSGMOG00000019547 Gadus morhua ENSGMOG00000019547 N 0.000
ENSGMOG00000019538 Gadus morhua ENSGMOG00000019538 N 0.000
ENSGALG00000000427 Gallus gallus ENSGALG00000000427 N 0.000
kdm5ba Gasterosteus aculeatus ENSGACG00000000508 N 0.000
kdm5bb Gasterosteus aculeatus ENSGACG00000011868 N 0.000
KDM5B Gorilla gorilla ENSGGOG00000003073 N 0.000
HMEL015554 Heliconius melpomene HMEL015554 N 0.000
KDM5B Homo sapiens ENSG00000117139 N 0.000
HDID_0000434601 Hymenolepis diminuta HDID_0000434601 N 0.000
ENSSTOG00000000372 Ictidomys tridecemlineatus ENSSTOG00000000372 N 0.000
ENSLACG00000012136 Latimeria chalumnae ENSLACG00000012136 N 0.000
ENSLOCG00000010123 Lepisosteus oculatus ENSLOCG00000010123 N 0.000
LotgiG205701 Lottia gigantea LotgiG205701 N 0.000
KDM5B Loxodonta africana ENSLAFG00000005104 N 0.000
LLOJ009523 Lutzomyia longipalpis LLOJ009523 N 0.000
ENSP00000356233 Macaca fascicularis ENSP00000356233 N 0.000
KDM5B Macaca mulatta ENSMMUG00000015233 N 0.000
ENSMEUG00000014994 Macropus eugenii ENSMEUG00000014994 N 0.000
KDM5B Meleagris gallopavo ENSMGAG00000001393 N 0.000
MCINX012993 Melitaea cinxia MCINX012993 N 0.000
KDM5B Microcebus murinus ENSMICG00000006046 N 0.000
KDM5B Monodelphis domestica ENSMODG00000000755 N 0.000
ENSMPUG00000011183 Mustela putorius furo ENSMPUG00000011183 N 0.000
Kdm5d Mus musculus ENSMUSG00000056673 N 0.000
Kdm5b Mus musculus ENSMUSG00000042207 N 0.000
Myotis_brandtii_KDM5B_10012819 Myotis brandtii Myotis_brandtii_KDM5B_10012819 N 0.000
Myotis_brandtii_KDM5B_10008160 Myotis brandtii Myotis_brandtii_KDM5B_10008160 N 0.000
ENSMLUG00000024285 Myotis lucifugus ENSMLUG00000024285 N 0.000
ENSMLUG00000015035 Myotis lucifugus ENSMLUG00000015035 N 0.000
NV16665 Nasonia vitripennis NV16665 N 0.000
ENSNLEG00000018101 Nomascus leucogenys ENSNLEG00000018101 N 0.000
Ogr08783 Ophisaurus gracilis Ogr08783 N 0.000
ENSONIG00000016770 Oreochromis niloticus ENSONIG00000016770 N 0.000
ENSONIG00000019223 Oreochromis niloticus ENSONIG00000019223 N 0.000
KDM5B Ornithorhynchus anatinus ENSOANG00000002512 N 0.000
KDM5B Oryctolagus cuniculus ENSOCUG00000008003 N 0.000
kdm5ba Oryzias latipes ENSORLG00000014767 N 0.000
kdm5bb Oryzias latipes ENSORLG00000014990 N 0.000
ENSOARG00000018421 Ovis aries ENSOARG00000018421 N 0.000
ENSPTRG00000021925 Pan troglodytes ENSPTRG00000021925 N 0.000
KDM5B Pan troglodytes ENSPTRG00000001856 N 0.000
ENSPANG00000014633 Papio anubis ENSPANG00000014633 N 0.000
ENSPMAG00000003030 Petromyzon marinus ENSPMAG00000003030 N 0.000
ENSPFOG00000015221 Poecilia formosa ENSPFOG00000015221 N 0.000
ENSPFOG00000006840 Poecilia formosa ENSPFOG00000006840 N 0.000
ENSPPYG00000000346 Pongo abelii ENSPPYG00000000346 N 0.000
PXEA_0001524101 Protopolystoma xenopodis PXEA_0001524101 N 0.000
KDM5B Pteropus vampyrus ENSPVAG00000011030 N 0.000
Kdm5c Rattus norvegicus ENSRNOG00000057706 N 0.000
Kdm5b Rattus norvegicus ENSRNOG00000060544 N 0.000
RPRC012847 Rhodnius prolixus RPRC012847 N 0.000
Sakowv30029063m.g Saccoglossus kowalevskii Sakowv30029063m.g N 0.000
ENSSHAG00000015215 Sarcophilus harrisii ENSSHAG00000015215 N 0.000
ENSSHAG00000000588 Sarcophilus harrisii ENSSHAG00000000588 N 0.000
KDM5B Sorex araneus ENSSARG00000012265 N 0.000
KDM5C Sorex araneus ENSSARG00000000542 N 0.000
SMAR004279 Strigamia maritima SMAR004279 N 0.000
KDM5B Sus scrofa ENSSSCG00000010928 N 0.000
KDM5B Taeniopygia guttata ENSTGUG00000001257 N 0.000
kdm5ba Takifugu rubripes ENSTRUG00000013308 N 0.000
tetur02g05990 Tetranychus urticae tetur02g05990 N 0.000
kdm5ba Tetraodon nigroviridis ENSTNIG00000007074 N 0.000
fgeneshTM_pg.7_#_246 Tremella mesenterica fgeneshTM_pg.7_#_246 N 0.000
KDM5B Tupaia belangeri ENSTBEG00000006521 N 0.000
KDM5B Tursiops truncatus ENSTTRG00000001078 N 0.000
KDM5B Vicugna pacos ENSVPAG00000006056 N 0.000
kdm5b Xenopus tropicalis XB-GENE-856240 N 0.000
ENSXMAG00000003378 Xiphophorus maculatus ENSXMAG00000003378 N 0.000
ENSXMAG00000011463 Xiphophorus maculatus ENSXMAG00000011463 N 0.000