CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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GRMZM2G001223
(
Zea mays
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
GRMZM2G001223
T271869_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB106
M11040_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G01140_01
0.766
0.914
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.711
0.785
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.711
0.785
MYB43
M07127_2.00
Arabidopsis thaliana
NYYYACCWAMYWH
DWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB43_col_a
0.695
0.699
AtMYB93
M07020_2.00
Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH
DDDDDDDDRKTWGKTRRRNHD
Dap-seq
OMalley et al.(2016)
MYB93_col_a
0.666
0.742
AtMYB93
M07021_2.00
Arabidopsis thaliana
NNHNBYYYAMCWAMY
RKTWGKTRRRVNDNN
Dap-seq
OMalley et al.(2016)
MYB93_colamp_a
0.666
0.742
PK21166.1
M01281_2.00
Cannabis sativa
HACCWAMY
RKTWGGTD
PBM
Lambert et al.(2019)
pTH11255
0.666
0.699
MYB49
M07140_2.00
Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD
Dap-seq
OMalley et al.(2016)
MYB49_col_a
0.665
0.763
MYB49
M07141_2.00
Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB49_colamp_a
0.665
0.763
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
GRMZM2G001223_P01
Myb
5
33
RATRRWSSIATHLPKRTDNEIKNYWNTHL
GRMZM2G001223_P02
Myb
2
24
RVRLSAGLRRCGKSCRLRWTNYL
GRMZM2G001223_P02
Myb
30
75
RGKFTLQEEQTIIQLHALLGNRWSSIATHLPKRTDNEIKNYWNTHL
GRMZM2G001223_P03
Myb
15
62
KGPWTSEEDQKLLAFIEQHGHGCWRSLPAKAGLRRCGKSCRLRWTNYL
GRMZM2G001223_P03
Myb
68
113
RGKFTLQEEQTIIQLHALLGNRWSSIATHLPKRTDNEIKNYWNTHL
GRMZM2G001223_P04
Myb
5
33
RATRRWSSIATHLPKRTDNEIKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Zea mays
TFs
821 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy