gw1.68.55.1 (Bigelowiella natans)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 gw1.68.55.1 T273192_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
mybG
M02319_2.00 		Dictyostelium discoideum
WAATATCT
AGATATTW		 PBM
Weirauch et al.(2014)
pTH5362 		0.682 0.630
RVE8
M01074_2.00 		Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN		 PBM
Sullivan et al.(2014)
pTH7136 		0.664 0.609
RVE8
M07069_2.00 		Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN		 Dap-seq
OMalley et al.(2016)
At3g09600_col_a 		0.664 0.609
RVE8
M07070_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a 		0.664 0.609
PK02532.1
M02347_2.00 		Cannabis sativa
WAATATCTN
NAGATATTW		 PBM
Weirauch et al.(2014)
pTH9579 		0.664 0.587
RVE4
M07117_2.00 		Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN		 Dap-seq
OMalley et al.(2016)
LCL1_colamp_a 		0.664 0.587
RVE4
M07118_2.00 		Arabidopsis thaliana
NAAAATATCT
AGATATTTTN		 Dap-seq
OMalley et al.(2016)
LCL1_col 		0.664 0.587
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
JGI_V11_27638 Myb 15 60

Links

Other Myb/SANT family TFs
Other Bigelowiella natans TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh2_pg.C_Chr_110083 Micromonas sp RCC299 estExt_fgenesh2_pg.C_Chr_110083 I 0.745
CMK043C Cyanidioschyzon merolae CMK043C I 0.725
EuGene.0400010070 Ostreococcus RCC809 EuGene.0400010070 I 0.725
BGIOSGA018757 Oryza indica BGIOSGA018757 I 0.711
estExt_fgenesh1_pg.C_190109 Bigelowiella natans estExt_fgenesh1_pg.C_190109 I 0.699
estExt_Genewise1.C_5980003 Dictyostelium purpureum estExt_Genewise1.C_5980003 I 0.693
OSTLU_6612 Ostreococcus lucimarinus OSTLU_6612 I 0.689
Cucsa.108150 Cucumis sativus Cucsa.108150 I 0.685
GLYMA09G24400 Glycine max GLYMA09G24400 I 0.683
GLYMA16G29740 Glycine max GLYMA16G29740 I 0.683
mybG Dictyostelium discoideum DDB_G0288783 D 0.682
POPTR_0014s10240 Populus trichocarpa POPTR_0014s10240 I 0.677
EFA77680.1 Polysphondylium pallidum EFA77680.1 I 0.675
AT1G01520 Arabidopsis thaliana AT1G01520 I 0.674
PGSC0003DMG400025632 Solanum tuberosum PGSC0003DMG400025632 I 0.669
Solyc03g098320.2 Solanum lycopersicum Solyc03g098320.2 I 0.669
Cucsa.112530 Cucumis sativus Cucsa.112530 I 0.668
Cla018914 Citrullus lanatus Cla018914 I 0.668
OBART05G04370 Oryza barthii OBART05G04370 I 0.665
ORUFI05G04560 Oryza rufipogon ORUFI05G04560 I 0.665
OMERI05G04320 Oryza meridionalis OMERI05G04320 I 0.665
OGLUM05G04280 Oryza glumaepatula OGLUM05G04280 I 0.665
POPTR_0012s03530 Populus trichocarpa POPTR_0012s03530 I 0.665
ONIVA05G04710 Oryza nivara ONIVA05G04710 I 0.665
OS05G0162800 Oryza sativa OS05G0162800 I 0.665
SapurV1A.0074s0170 Salix purpurea SapurV1A.0074s0170 I 0.665
SapurV1A.0202s0430 Salix purpurea SapurV1A.0202s0430 I 0.665
TRIUR3_10644 Triticum urartu TRIUR3_10644 I 0.664
cassava7251.valid.m1 Manihot esculenta cassava7251.valid.m1 I 0.664
cassava43544.valid.m1 Manihot esculenta cassava43544.valid.m1 I 0.664
cassava36811.valid.m1 Manihot esculenta cassava36811.valid.m1 I 0.664
cassava43543.valid.m1 Manihot esculenta cassava43543.valid.m1 I 0.664
TCM_015255 Theobroma cacao TCM_015255 I 0.664
cassava43542.valid.m1 Manihot esculenta cassava43542.valid.m1 I 0.664
Ca_13713 Cicer arietinum Ca_13713 I 0.664
Cucsa.307250 Cucumis sativus Cucsa.307250 I 0.664
TCM_005269 Theobroma cacao TCM_005269 I 0.664
VIT_15s0046g02260 Vitis vinifera VIT_15s0046g02260 I 0.664
Cucsa.258660 Cucumis sativus Cucsa.258660 I 0.664
VIT_16s0050g01180 Vitis vinifera VIT_16s0050g01180 I 0.664
cassava18981.valid.m1 Manihot esculenta cassava18981.valid.m1 I 0.664
Cucsa.192960 Cucumis sativus Cucsa.192960 I 0.664
Ca_14048 Cicer arietinum Ca_14048 I 0.664
cassava18980.valid.m1 Manihot esculenta cassava18980.valid.m1 I 0.664
Pm002840 Prunus mume Pm002840 I 0.664
Pm018226 Prunus mume Pm018226 I 0.664
Traes_6DL_30F715B53 Triticum aestivum Traes_6DL_30F715B53 I 0.664
Cla021528 Citrullus lanatus Cla021528 I 0.664
Cla018126 Citrullus lanatus Cla018126 I 0.664
Traes_7DL_AB55D9F4E Triticum aestivum Traes_7DL_AB55D9F4E I 0.664
Traes_6AL_362F82EAD Triticum aestivum Traes_6AL_362F82EAD I 0.664
29805.m001497 Ricinus communis 29805.m001497 I 0.664
cassava12929.valid.m1 Manihot esculenta cassava12929.valid.m1 I 0.664
Cla005022 Citrullus lanatus Cla005022 I 0.664
cassava12928.valid.m1 Manihot esculenta cassava12928.valid.m1 I 0.664
30169.m006616 Ricinus communis 30169.m006616 I 0.664
Traes_4AL_D00AB8CFA Triticum aestivum Traes_4AL_D00AB8CFA I 0.664
VIT_08s0040g03220 Vitis vinifera VIT_08s0040g03220 I 0.664
TCM_022074 Theobroma cacao TCM_022074 I 0.664
Aquca_013_00181 Aquilegia coerulea Aquca_013_00181 I 0.664
MDP0000186860 Malus domestica MDP0000186860 I 0.664
MDP0000282906 Malus domestica MDP0000282906 I 0.664
Pavir.Aa00937 Panicum virgatum Pavir.Aa00937 I 0.664
Pavir.Ca00604 Panicum virgatum Pavir.Ca00604 I 0.664
Lus10036392.g Linum usitatissimum Lus10036392.g I 0.664
Lus10019902.g Linum usitatissimum Lus10019902.g I 0.664
Gorai.007G102900 Gossypium raimondii Gorai.007G102900 I 0.664
Gorai.008G274500 Gossypium raimondii Gorai.008G274500 I 0.664
Lus10007914.g Linum usitatissimum Lus10007914.g I 0.664
Lus10014015.g Linum usitatissimum Lus10014015.g I 0.664
Pavir.Da00204 Panicum virgatum Pavir.Da00204 I 0.664
Pavir.Db00388 Panicum virgatum Pavir.Db00388 I 0.664
Thhalv10021220m.g Eutrema salsugineum Thhalv10021220m.g I 0.664
PK02532.1 Cannabis sativa PK02532.1 D 0.664
PK06515.1 Cannabis sativa PK06515.1 I 0.664
LjT02J13.100.nc Lotus japonicus LjT02J13.100.nc I 0.664
Thhalv10014025m.g Eutrema salsugineum Thhalv10014025m.g I 0.664
Thhalv10008382m.g Eutrema salsugineum Thhalv10008382m.g I 0.664
SapurV1A.0013s1130 Salix purpurea SapurV1A.0013s1130 I 0.664
SapurV1A.0247s0220 Salix purpurea SapurV1A.0247s0220 I 0.664
SapurV1A.0804s0060 Salix purpurea SapurV1A.0804s0060 I 0.664
Gorai.007G013200 Gossypium raimondii Gorai.007G013200 I 0.664
Gorai.006G178000 Gossypium raimondii Gorai.006G178000 I 0.664
Bostr.5325s0070 Boechera stricta Bostr.5325s0070 I 0.664
Cagra.1968s0093 Capsella grandiflora Cagra.1968s0093 I 0.664
Cagra.2240s0021 Capsella grandiflora Cagra.2240s0021 I 0.664
Carubv10001591m.g Capsella rubella Carubv10001591m.g I 0.664
Bostr.22252s0109 Boechera stricta Bostr.22252s0109 I 0.664
Bostr.2128s0168 Boechera stricta Bostr.2128s0168 I 0.664
fgenesh1_pg.scaffold_198000070 Physcomitrella patens fgenesh1_pg.scaffold_198000070 I 0.664
gw1.46.107.1 Physcomitrella patens gw1.46.107.1 I 0.664
mgf012072m Mimulus guttatus mgf012072m I 0.664
Solyc10g084370.1 Solanum lycopersicum Solyc10g084370.1 I 0.664
Carubv10011679m.g Capsella rubella Carubv10011679m.g I 0.664
Carubv10014328m.g Capsella rubella Carubv10014328m.g I 0.664
evm.TU.supercontig_184.27 Carica papaya evm.TU.supercontig_184.27 I 0.664
gene18104-v1.0-hybrid Fragaria vesca gene18104-v1.0-hybrid I 0.664
gene19228-v1.0-hybrid Fragaria vesca gene19228-v1.0-hybrid I 0.664
Gorai.004G159700 Gossypium raimondii Gorai.004G159700 I 0.664
evm.TU.supercontig_114.57 Carica papaya evm.TU.supercontig_114.57 I 0.664
Eucgr.D02320 Eucalyptus grandis Eucgr.D02320 I 0.664
Ciclev10012263m.g Citrus clementina Ciclev10012263m.g I 0.664
Eucgr.A01184 Eucalyptus grandis Eucgr.A01184 I 0.664
Eucgr.A02733 Eucalyptus grandis Eucgr.A02733 I 0.664
fgenesh1_pg.scaffold_160000002 Physcomitrella patens fgenesh1_pg.scaffold_160000002 I 0.664
SELMODRAFT_19077 Selaginella moellendorffii SELMODRAFT_19077 I 0.664
GLYMA20G30250 Glycine max GLYMA20G30250 I 0.664
GRMZM2G057408 Zea mays GRMZM2G057408 I 0.664
GRMZM2G118693 Zea mays GRMZM2G118693 I 0.664
GRMZM2G135052 Zea mays GRMZM2G135052 I 0.664
RVE8 Arabidopsis thaliana AT3G09600 D 0.664
GLYMA18G47230 Glycine max GLYMA18G47230 I 0.664
GLYMA10G37520 Glycine max GLYMA10G37520 I 0.664
GLYMA13G19910 Glycine max GLYMA13G19910 I 0.664
GLYMA16G03640 Glycine max GLYMA16G03640 I 0.664
GRMZM2G170148 Zea mays GRMZM2G170148 I 0.664
GSMUA_Achr1G03720_001 Musa acuminata GSMUA_Achr1G03720_001 I 0.664
MLOC_5597 Hordeum vulgare MLOC_5597 I 0.664
MLOC_56804 Hordeum vulgare MLOC_56804 I 0.664
MLOC_68189 Hordeum vulgare MLOC_68189 I 0.664
Solyc06g036300.2 Solanum lycopersicum Solyc06g036300.2 I 0.664
LPERR06G20160 Leersia perrieri LPERR06G20160 I 0.664
LPERR02G22740 Leersia perrieri LPERR02G22740 I 0.664
GSMUA_Achr1G06480_001 Musa acuminata GSMUA_Achr1G06480_001 I 0.664
GSMUA_Achr5G10280_001 Musa acuminata GSMUA_Achr5G10280_001 I 0.664
GSMUA_Achr7G17560_001 Musa acuminata GSMUA_Achr7G17560_001 I 0.664
GLYMA10G05560 Glycine max GLYMA10G05560 I 0.664
GLYMA07G07200 Glycine max GLYMA07G07200 I 0.664
Bo9g183320 Brassica oleracea Bo9g183320 I 0.664
Bra005751 Brassica rapa Bra005751 I 0.664
Bra009562 Brassica rapa Bra009562 I 0.664
Bra029778 Brassica rapa Bra029778 I 0.664
Bo5g138190 Brassica oleracea Bo5g138190 I 0.664
Bo5g002430 Brassica oleracea Bo5g002430 I 0.664
BGIOSGA020708 Oryza indica BGIOSGA020708 I 0.664
Bo1g144410 Brassica oleracea Bo1g144410 I 0.664
Bo3g002070 Brassica oleracea Bo3g002070 I 0.664
Bra033257 Brassica rapa Bra033257 I 0.664
Bra034074 Brassica rapa Bra034074 I 0.664
LCL1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6000163 I 0.664
fgenesh2_kg.3__982__AT3G09600.1 Arabidopsis lyrata fgenesh2_kg.3__982__AT3G09600.1 I 0.664
GLYMA03G33440 Glycine max GLYMA03G33440 I 0.664
AN Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000066 I 0.664
F775_30481 Aegilops tauschii F775_30481 I 0.664
BRADI1G32330 Brachypodium distachyon BRADI1G32330 I 0.664
BRADI3G51757 Brachypodium distachyon BRADI3G51757 I 0.664
F775_09103 Aegilops tauschii F775_09103 I 0.664
MTR_0123s0070 Medicago truncatula MTR_0123s0070 I 0.664
RVE4 Arabidopsis thaliana AT5G02840 D 0.664
POPTR_0006s13530 Populus trichocarpa POPTR_0006s13530 I 0.664
POPTR_0014s08520 Populus trichocarpa POPTR_0014s08520 I 0.664
POPTR_0016s08470 Populus trichocarpa POPTR_0016s08470 I 0.664
PRUPE_ppa008029mg Prunus persica PRUPE_ppa008029mg I 0.664
POPTR_0002s16460 Populus trichocarpa POPTR_0002s16460 I 0.664
PGSC0003DMG400028896 Solanum tuberosum PGSC0003DMG400028896 I 0.664
OS06G0105800 Oryza sativa OS06G0105800 I 0.664
AMTR_s00023p00237480 Amborella trichopoda AMTR_s00023p00237480 I 0.664
PGSC0003DMG400011048 Solanum tuberosum PGSC0003DMG400011048 I 0.664
PRUPE_ppa011002mg Prunus persica PRUPE_ppa011002mg I 0.664
Sb04g031820 Sorghum bicolor Sb04g031820 I 0.664
Si006824m.g Setaria italica Si006824m.g I 0.664
Si006883m.g Setaria italica Si006883m.g I 0.664
Si017977m.g Setaria italica Si017977m.g I 0.664
Solyc01g095030.2 Solanum lycopersicum Solyc01g095030.2 I 0.664
SELMODRAFT_78045 Selaginella moellendorffii SELMODRAFT_78045 I 0.664
SELMODRAFT_72682 Selaginella moellendorffii SELMODRAFT_72682 I 0.664
Sb10g000590 Sorghum bicolor Sb10g000590 I 0.664
SELMODRAFT_137893 Selaginella moellendorffii SELMODRAFT_137893 I 0.664
AMTR_s00001p00261430 Amborella trichopoda AMTR_s00001p00261430 I 0.664
OS02G0680700 Oryza sativa OS02G0680700 I 0.664
ORUFI06G26070 Oryza rufipogon ORUFI06G26070 I 0.664
OBART02G27940 Oryza barthii OBART02G27940 I 0.664
OBART06G24250 Oryza barthii OBART06G24250 I 0.664
OGLUM02G28500 Oryza glumaepatula OGLUM02G28500 I 0.664
OGLUM06G25500 Oryza glumaepatula OGLUM06G25500 I 0.664
OB06G32000 Oryza brachyantha OB06G32000 I 0.664
OB06G10430 Oryza brachyantha OB06G10430 I 0.664
MTR_1g067000 Medicago truncatula MTR_1g067000 I 0.664
MTR_8g028655 Medicago truncatula MTR_8g028655 I 0.664
OB02G35240 Oryza brachyantha OB02G35240 I 0.664
OMERI02G27110 Oryza meridionalis OMERI02G27110 I 0.664
OMERI06G24490 Oryza meridionalis OMERI06G24490 I 0.664
ORGLA06G0003400 Oryza glaberrima ORGLA06G0003400 I 0.664
ORGLA06G0204000 Oryza glaberrima ORGLA06G0204000 I 0.664
ORUFI02G29430 Oryza rufipogon ORUFI02G29430 I 0.664
ORGLA02G0240100 Oryza glaberrima ORGLA02G0240100 I 0.664
OPUNC06G21970 Oryza punctata OPUNC06G21970 I 0.664
ONIVA02G31050 Oryza nivara ONIVA02G31050 I 0.664
ONIVA06G30670 Oryza nivara ONIVA06G30670 I 0.664
OPUNC02G25660 Oryza punctata OPUNC02G25660 I 0.664
BGIOSGA005842 Oryza indica BGIOSGA005842 I 0.664
fgeneshCV_pg.C_scaffold_2000223 Chlorella vulgaris fgeneshCV_pg.C_scaffold_2000223 N 0.662
Aquca_027_00135 Aquilegia coerulea Aquca_027_00135 I 0.661
PGSC0003DMG400000189 Solanum tuberosum PGSC0003DMG400000189 I 0.661
mgf015175m Mimulus guttatus mgf015175m I 0.661
GLYMA19G36170 Glycine max GLYMA19G36170 I 0.661