CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MTR_3g039990
(
Medicago truncatula
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
MTR_3g039990
T274758_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB94
M02298_2.00
Arabidopsis thaliana
DACCGGTH
DACCGGTH
PBM
Weirauch et al.(2014)
pTH7085
0.874
0.946
MYB94
M07094_2.00
Arabidopsis thaliana
HHNYHYCAACYACYWHHNN
NNDDWRGTRGTTGRDRNDD
Dap-seq
OMalley et al.(2016)
MYB94_col_b
0.874
0.946
MYB30
M07089_2.00
Arabidopsis thaliana
NHHHCAACYACYWHH
DDWRGTRGTTGDDDN
Dap-seq
OMalley et al.(2016)
MYB30_col_a
0.868
0.914
MYB30
M07090_2.00
Arabidopsis thaliana
HHHYYHCCAACYAMY
RKTRGTTGGDRRDDD
Dap-seq
OMalley et al.(2016)
MYB30_colamp_a
0.868
0.914
MYB60
M07001_2.00
Arabidopsis thaliana
HNNHYYCAACYACYWHHNN
NNDDWRGTRGTTGRRDNND
Dap-seq
OMalley et al.(2016)
MYB60_col
0.855
0.914
MYB96
M07153_2.00
Arabidopsis thaliana
HHHHHYHHCCAACYAHYWNHN
NDNWRDTRGTTGGDDRDDDDD
Dap-seq
OMalley et al.(2016)
MYB96_colamp_a
0.850
0.935
MYB96
M07154_2.00
Arabidopsis thaliana
YAMCHNCCAMCHAHHHHH
DDDDDTDGKTGGNDGKTR
Dap-seq
OMalley et al.(2016)
MYB96_col_b
0.850
0.935
ATY13
M07035_2.00
Arabidopsis thaliana
HAMCHMCCAMCHAHH
DDTDGKTGGKDGKTD
Dap-seq
OMalley et al.(2016)
ATY13_col_a
0.837
0.914
ATY13
M07036_2.00
Arabidopsis thaliana
HAMCHHCCAACHAHH
DDTDGTTGGDDGKTD
Dap-seq
OMalley et al.(2016)
ATY13_colamp_a
0.837
0.914
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AES69919
Myb
15
62
KGPWTPEEDIILVSYIQEHGPGNWRSVPTTTGLMRCSKSCRLRWTNYL
AES69919
Myb
68
113
RGNFNDHEEKMIIHLQALLGNRWAAIASYLPERTDNDIKNYWNTHL
Links
Other
Myb/SANT
family TFs
Other
Medicago truncatula
TFs
311 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy