CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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OBART05G04370
(
Oryza barthii
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00249 (Myb_DNA-binding)
IPR014778
OBART05G04370
T275517_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CCA1
M00875_2.00
Arabidopsis thaliana
NDNRWATCN
NGATWYNHN
PBM
Franco-Zorrilla et al.(2014)
CCA1
0.748
0.696
CCA1
M11039_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CCA1_Q5
0.748
0.696
LHY
M06997_2.00
Arabidopsis thaliana
NWAAATATCT
AGATATTTWN
Dap-seq
OMalley et al.(2016)
LHY1_col_a
0.723
0.696
LHY
M06998_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LHY1_colamp_a
0.723
0.696
OS08G0157600
M02330_2.00
Oryza sativa
DNRTATCHN
NDGATAYNH
PBM
Weirauch et al.(2014)
pTH7793
0.715
0.696
RVE8
M01074_2.00
Arabidopsis thaliana
NNNRWATCNN
NNGATWYNNN
PBM
Sullivan et al.(2014)
pTH7136
0.664
0.696
mybG
M02319_2.00
Dictyostelium discoideum
WAATATCT
AGATATTW
PBM
Weirauch et al.(2014)
pTH5362
0.664
0.696
RVE8
M07069_2.00
Arabidopsis thaliana
NHNWAAATATCT
AGATATTTWNDN
Dap-seq
OMalley et al.(2016)
At3g09600_col_a
0.664
0.696
RVE8
M07070_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a
0.664
0.696
PK02532.1
M02347_2.00
Cannabis sativa
WAATATCTN
NAGATATTW
PBM
Weirauch et al.(2014)
pTH9579
0.664
0.674
RVE4
M07117_2.00
Arabidopsis thaliana
NNWAAATATCT
AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LCL1_colamp_a
0.664
0.674
RVE4
M07118_2.00
Arabidopsis thaliana
NAAAATATCT
AGATATTTTN
Dap-seq
OMalley et al.(2016)
LCL1_col
0.664
0.674
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
OBART05G04370.1
Myb
27
72
RERWSAEEHERFLDALLLFGRDWKRIEGFVATKTAIQIRSHAQKHF
Links
Other
Myb/SANT
family TFs
Other
Oryza barthii
TFs
324 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy