PGSC0003DMG400018279 (Solanum tuberosum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 PGSC0003DMG400018279 T277629_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB55
M00876_2.00
Arabidopsis thaliana
ACCWAMCD

HGKTWGGT
PBM
Franco-Zorrilla et al.(2014)
MYB55
0.830 0.902
MYB55
M07102_2.00
Arabidopsis thaliana
HNNNHBYAMCWAMCD

HGKTWGKTRVDNNND
Dap-seq
OMalley et al.(2016)
MYB55_colamp_a
0.830 0.902
MYB55
M07103_2.00
Arabidopsis thaliana
NYNYAMCHACCRHH

DDYGGTDGKTRNRN
Dap-seq
OMalley et al.(2016)
MYB55_col
0.830 0.902
MYB61
M07002_2.00
Arabidopsis thaliana
HNYAMCHACCDNHNH

DNDNHGGTDGKTRND
Dap-seq
OMalley et al.(2016)
MYB61_col_a
0.829 0.891
MYB61
M07003_2.00
Arabidopsis thaliana
NHNYACCWAMCDH

DHGKTWGGTRNDN
Dap-seq
OMalley et al.(2016)
MYB61_colamp_a
0.829 0.891
MYB83
M01073_2.00
Arabidopsis thaliana
YACCHACC

GGTDGGTR
PBM
Sullivan et al.(2014)
pTH7140
0.677 0.717
MYB83
M07066_2.00
Arabidopsis thaliana
YCACCAACHNH

DNDGTTGGTGR
Dap-seq
OMalley et al.(2016)
MYB83_col_a
0.677 0.717
MYB83
M07067_2.00
Arabidopsis thaliana
NCACCWAMCDNHNNN

NNNDNHGKTWGGTGN
Dap-seq
OMalley et al.(2016)
MYB83_colamp_a
0.677 0.717
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH

DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.669 0.717
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY

RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.668 0.685
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH

DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.668 0.685
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH

DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.666 0.696
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH

DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.666 0.696
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400047076 Myb 14 61
PGSC0003DMT400047076 Myb 67 111

Links

Other Myb/SANT family TFs
Other Solanum tuberosum TFs

808 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SCL1 Arabidopsis lyrata fgenesh2_kg.1__2335__AT1G21450.1 N 0.000
SCL1 Arabidopsis thaliana AT1G21450 N 0.000
Bo5g034360 Brassica oleracea Bo5g034360 N 0.000
Bo7g059410 Brassica oleracea Bo7g059410 N 0.000
Bra012280 Brassica rapa Bra012280 N 0.000
Bra017915 Brassica rapa Bra017915 N 0.000
PK29476.1 Cannabis sativa PK29476.1 N 0.000
Cagra.1632s0036 Capsella grandiflora Cagra.1632s0036 N 0.000
Carubv10008658m.g Capsella rubella Carubv10008658m.g N 0.000
evm.TU.supercontig_26.96 Carica papaya evm.TU.supercontig_26.96 N 0.000
Ca_03920 Cicer arietinum Ca_03920 N 0.000
Ca_13101 Cicer arietinum Ca_13101 N 0.000
Ca_13102 Cicer arietinum Ca_13102 N 0.000
Ciclev10000671m.g Citrus clementina Ciclev10000671m.g N 0.000
orange1.1g007853m.g Citrus sinensis orange1.1g007853m.g N 0.000
Eucgr.F04276 Eucalyptus grandis Eucgr.F04276 N 0.000
Thhalv10007142m.g Eutrema salsugineum Thhalv10007142m.g N 0.000
gene01015-v1.0-hybrid Fragaria vesca gene01015-v1.0-hybrid N 0.000
GLYMA13G09220 Glycine max GLYMA13G09220 N 0.000
GLYMA04G42090 Glycine max GLYMA04G42090 N 0.000
GLYMA06G12701 Glycine max GLYMA06G12701 N 0.000
GLYMA14G27290 Glycine max GLYMA14G27290 N 0.000
Gorai.009G251800 Gossypium raimondii Gorai.009G251800 N 0.000
Gorai.005G083700 Gossypium raimondii Gorai.005G083700 N 0.000
chr1.CM0982.460.nd Lotus japonicus chr1.CM0982.460.nd N 0.000
LjSGA_053605.1 Lotus japonicus LjSGA_053605.1 N 0.000
MDP0000859087 Malus domestica MDP0000859087 N 0.000
MDP0000727836 Malus domestica MDP0000727836 N 0.000
cassava42388.valid.m1 Manihot esculenta cassava42388.valid.m1 N 0.000
cassava26784.m1 Manihot esculenta cassava26784.m1 N 0.000
MTR_1g029420 Medicago truncatula MTR_1g029420 N 0.000
MTR_3g089055 Medicago truncatula MTR_3g089055 N 0.000
POPTR_0005s20890 Populus trichocarpa POPTR_0005s20890 N 0.000
POPTR_0002s07430 Populus trichocarpa POPTR_0002s07430 N 0.000
Pm022704 Prunus mume Pm022704 N 0.000
PRUPE_ppa003310mg Prunus persica PRUPE_ppa003310mg N 0.000
29648.m001919 Ricinus communis 29648.m001919 N 0.000
SapurV1A.0267s0240 Salix purpurea SapurV1A.0267s0240 N 0.000
SapurV1A.0261s0120 Salix purpurea SapurV1A.0261s0120 N 0.000
TCM_035362 Theobroma cacao TCM_035362 N 0.000
VIT_04s0044g01370 Vitis vinifera VIT_04s0044g01370 N 0.000