POPTR_0001s47430 (Populus trichocarpa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 POPTR_0001s47430 T278208_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB80
M07142_2.00
Arabidopsis thaliana
NYYYACCTAMYWHNN

NNDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MS188_col_a
0.812 0.914
MYB80
M07143_2.00
Arabidopsis thaliana
YYYACCTAMYTWNNN

NNNWARKTAGGTRRR
Dap-seq
OMalley et al.(2016)
MS188_colamp_a
0.812 0.914
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s47430.1 Myb 14 61
POPTR_0001s47430.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Populus trichocarpa TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Al_scaffold_0008_2049 Arabidopsis lyrata Al_scaffold_0008_2049 I 0.812
Aquca_005_00315 Aquilegia coerulea Aquca_005_00315 I 0.857
AtMYB103 Vitis vinifera VIT_19s0015g01280 I 0.889
AtMYB103 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001268 I 0.808
BGIOSGA014912 Oryza indica BGIOSGA014912 I 0.868
BGIOSGA030830 Oryza indica BGIOSGA030830 I 0.848
Bo2g036530 Brassica oleracea Bo2g036530 I 0.830
Bo9g123440 Brassica oleracea Bo9g123440 I 0.802
Bostr.26833s0652 Boechera stricta Bostr.26833s0652 I 0.821
Bra002847 Brassica rapa Bra002847 I 0.812
Bra035604 Brassica rapa Bra035604 I 0.830
BRADI5G13041 Brachypodium distachyon BRADI5G13041 I 0.846
Cagra.3745s0008 Capsella grandiflora Cagra.3745s0008 I 0.812
Carubv10027619m.g Capsella rubella Carubv10027619m.g I 0.812
cassava33918.m1 Manihot esculenta cassava33918.m1 I 0.889
Ca_17657 Cicer arietinum Ca_17657 I 0.889
Ciclev10008921m.g Citrus clementina Ciclev10008921m.g I 0.875
Cla004524 Citrullus lanatus Cla004524 I 0.879
Cucsa.041880 Cucumis sativus Cucsa.041880 I 0.889
Eucgr.F03656 Eucalyptus grandis Eucgr.F03656 I 0.849
evm.TU.supercontig_12.83 Carica papaya evm.TU.supercontig_12.83 I 0.865
F775_22620 Aegilops tauschii F775_22620 I 0.868
gene01457-v1.0-hybrid Fragaria vesca gene01457-v1.0-hybrid I 0.883
GLYMA18G07960 Glycine max GLYMA18G07960 I 0.889
Gorai.009G454000 Gossypium raimondii Gorai.009G454000 I 0.889
GRMZM2G173633 Zea mays GRMZM2G173633 I 0.868
LPERR04G12420 Leersia perrieri LPERR04G12420 I 0.859
MTR_3g461490 Medicago truncatula MTR_3g461490 I 0.874
MYB80 Arabidopsis thaliana AT5G56110 D 0.812
OB04G23000 Oryza brachyantha OB04G23000 I 0.868
OGLUM04G15520 Oryza glumaepatula OGLUM04G15520 I 0.868
OMERI04G13500 Oryza meridionalis OMERI04G13500 I 0.868
ONIVA04G13800 Oryza nivara ONIVA04G13800 I 0.868
OPUNC04G13560 Oryza punctata OPUNC04G13560 I 0.868
ORGLA04G0126700 Oryza glaberrima ORGLA04G0126700 I 0.868
ORUFI04G17000 Oryza rufipogon ORUFI04G17000 I 0.868
Pavir.Ga01401 Panicum virgatum Pavir.Ga01401 I 0.868
Pavir.J28142 Panicum virgatum Pavir.J28142 I 0.752
PGSC0003DMG400008687 Solanum tuberosum PGSC0003DMG400008687 I 0.854
POPTR_0011s17060 Populus trichocarpa POPTR_0011s17060 I 0.880
PRUPE_ppa021719mg Prunus persica PRUPE_ppa021719mg I 0.889
SapurV1A.0338s0180 Salix purpurea SapurV1A.0338s0180 I 0.848
SapurV1A.0395s0050 Salix purpurea SapurV1A.0395s0050 I 0.892
Sb06g019650 Sorghum bicolor Sb06g019650 I 0.868
Si012130m.g Setaria italica Si012130m.g I 0.868
Solyc10g005760.1 Solanum lycopersicum Solyc10g005760.1 I 0.854
TCM_030529 Theobroma cacao TCM_030529 I 0.872
Thhalv10015622m.g Eutrema salsugineum Thhalv10015622m.g I 0.812
Traes_2BL_361925B62 Triticum aestivum Traes_2BL_361925B62 I 0.868
Traes_2DL_A03AB7608 Triticum aestivum Traes_2DL_A03AB7608 I 0.823
TRIUR3_35325 Triticum urartu TRIUR3_35325 I 0.868