TCM_000558 (Theobroma cacao)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 TCM_000558 T280422_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HHO6
M07024_2.00
Arabidopsis thaliana
GAATCTNNDAT

ATHNNAGATTC
Dap-seq
OMalley et al.(2016)
AT1G49560_col_a
0.876 0.936
HHO6
M07025_2.00
Arabidopsis thaliana
DGAATCTHNGATHCN

NGDATCNDAGATTCH
Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a
0.876 0.936
NIGT1
M02328_2.00
Oryza sativa
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH8646
0.863 0.915
HHO3
M02289_2.00
Arabidopsis thaliana
NWGATWCBNN

NNVGWATCWN
PBM
Weirauch et al.(2014)
pTH7278
0.855 0.915
HHO3
M07016_2.00
Arabidopsis thaliana
NNDHNNAAKATTCY

RGAATMTTNNDHNN
Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a
0.855 0.915
HHO3
M07017_2.00
Arabidopsis thaliana
HNNAAKATTCY

RGAATMTTNND
Dap-seq
OMalley et al.(2016)
At1g25550_col
0.855 0.915
HHO2
M02290_2.00
Arabidopsis thaliana
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH7115
0.837 0.894
HHO2
M07029_2.00
Arabidopsis thaliana
AKATTCY

RGAATMT
Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a
0.837 0.894
HHO2
M07030_2.00
Arabidopsis thaliana
RDATYNNAGATTC

GAATCTNNRATHY
Dap-seq
OMalley et al.(2016)
At1g68670_col
0.837 0.894
PK19779.1
M02354_2.00
Cannabis sativa
NNKATNCNNN

NNNGNATMNN
PBM
Weirauch et al.(2014)
pTH9610
0.814 0.894
PK14402.1
M02352_2.00
Cannabis sativa
NDWGATTCSNN

NNSGAATCWHN
PBM
Weirauch et al.(2014)
pTH9491
0.814 0.915
EFM
M07044_2.00
Arabidopsis thaliana
NNGAATATTCY

RGAATATTCNN
Dap-seq
OMalley et al.(2016)
At2g03500_col_a
0.810 0.915
EFM
M07045_2.00
Arabidopsis thaliana
RGAATCHWAGATTC

GAATCTWDGATTCY
Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a
0.810 0.915
HRS1
M02284_2.00
Arabidopsis thaliana
AGATTCYN

NRGAATCT
PBM
Weirauch et al.(2014)
pTH7118
0.736 0.830
HRS1
M01068_2.00
Arabidopsis thaliana
NAGATTCBNN

NNVGAATCTN
PBM
Sullivan et al.(2014)
pTH7648
0.736 0.830
HRS1
M07004_2.00
Arabidopsis thaliana
NDDWWVNAAKATTCY

RGAATMTTNBWWHHN
Dap-seq
OMalley et al.(2016)
At1g13300_col_a
0.736 0.830
HHO5
M07112_2.00
Arabidopsis thaliana
HNDAAGATTCH

DGAATCTTHND
Dap-seq
OMalley et al.(2016)
AT4G37180_col_a
0.672 0.830
HHO5
M07113_2.00
Arabidopsis thaliana
NNDAAGATTCY

RGAATCTTHNN
Dap-seq
OMalley et al.(2016)
AT4G37180_colamp_a
0.672 0.830
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOX91319 Myb 239 290

Links

Other Myb/SANT family TFs
Other Theobroma cacao TFs

365 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ACAC_0000964201 Angiostrongylus cantonensis ACAC_0000964201 I 0.000
ACOC_0000090001 Angiostrongylus costaricensis ACOC_0000090001 I 0.000
ANCCAN_11157 Ancylostoma caninum ANCCAN_11157 I 0.000
ANCDUO_15230 Ancylostoma duodenale ANCDUO_15230 I 0.000
ANCDUO_24750 Ancylostoma duodenale ANCDUO_24750 I 0.000
BXY_0111400 Bursaphelenchus xylophilus BXY_0111400 I 0.000
CBG07341 Caenorhabditis briggsae CBG07341 D 0.000
CBN16869 Caenorhabditis brenneri CBN16869 I 0.000
CJA17630 Caenorhabditis japonica CJA17630 I 0.000
CRE22330 Caenorhabditis remanei CRE22330 I 0.000
DICVIV_08599 Dictyocaulus viviparus DICVIV_08599 I 0.000
Hba_00399 Heterorhabditis bacteriophora Hba_00399 I 0.000
HCOI00096800 Haemonchus contortus HCOI00096800 I 0.000
HCOI00225500 Haemonchus contortus HCOI00225500 I 0.000
HCOI01260600 Haemonchus contortus HCOI01260600 I 0.000
HPBE_0001898401 Heligmosomoides bakeri HPBE_0001898401 I 0.000
NBR_0002046501 Nippostrongylus brasiliensis NBR_0002046501 I 0.000
OESDEN_01952 Oesophagostomum dentatum OESDEN_01952 I 0.000
OESDEN_22429 Oesophagostomum dentatum OESDEN_22429 I 0.000
Ppa-elt-3 Pristionchus pacificus PPA00209 I 0.000
PPA05888 Pristionchus pacificus PPA05888 I 0.000
scaffold161-EXSNAP2012.12 Pristionchus exspectatus scaffold161-EXSNAP2012.12 I 0.000
TELCIR_03216 Teladorsagia circumcincta TELCIR_03216 I 0.000
elt-3 Caenorhabditis elegans WBGene00001251 D 0.000