ATMYB52 (Vitis vinifera)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 VIT_17s0000g01890 T282082_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB52
M00871_2.00
Arabidopsis thaliana
NNNAMCNDNN

NNHNGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB52
0.839 0.925
MYB52
M07007_2.00
Arabidopsis thaliana
TAACGGTNHHD

HDDNACCGTTA
Dap-seq
OMalley et al.(2016)
MYB52_col_a
0.839 0.925
MYB105
M07031_2.00
Arabidopsis thaliana
TAACGGTWWHDDW

WHHDWWACCGTTA
Dap-seq
OMalley et al.(2016)
MYB105_col_a
0.742 0.806
MYB105
M07032_2.00
Arabidopsis thaliana
NNDWHDHTAACGGWWWH

DWWWCCGTTADHDWHNN
Dap-seq
OMalley et al.(2016)
MYB105_colamp_a
0.742 0.806
MYB56
M07130_2.00
Arabidopsis thaliana
DDHNHTAACKGWHWH

DWDWCMGTTADNDHH
Dap-seq
OMalley et al.(2016)
MYB56_col_a
0.722 0.763
MYB56
M07131_2.00
Arabidopsis thaliana
DNNHTAACGGWHWHD

HDWDWCCGTTADNNH
Dap-seq
OMalley et al.(2016)
MYB56_colamp_a
0.722 0.763
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
VIT_17s0000g01890.t01 Myb 4 50
VIT_17s0000g01890.t01 Myb 56 101

Links

Other Myb/SANT family TFs
Other Vitis vinifera TFs

375 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Alligator_sinensis_CCG010961.1 Alligator sinensis Alligator_sinensis_CCG010961.1 N 0.000
AFAF009298 Anopheles farauti AFAF009298 N 0.000
AMEM004106 Anopheles merus AMEM004106 N 0.000
ENSAMXG00000005041 Astyanax mexicanus ENSAMXG00000005041 N 0.000
ACEP25258 Atta cephalotes ACEP25258 N 0.000
Aan_R005441 Calypte anna Aan_R005441 N 0.000
TBX19 Canis familiaris ENSCAFG00000015268 I 0.000
ENSFALG00000012218 Ficedula albicollis ENSFALG00000012218 N 0.000
HMEL002424 Heliconius melpomene HMEL002424 N 0.000
ENSLACG00000008854 Latimeria chalumnae ENSLACG00000008854 N 0.000
SFT2D2 Macaca mulatta ENSMMUG00000005283 I 0.000
MESCA010408 Megaselia scalaris MESCA010408 N 0.000
T Microcebus murinus ENSMICG00000016122 N 0.000
ENSMPUG00000006418 Mustela putorius furo ENSMPUG00000006418 N 0.000
Myotis_brandtii_T_10014749 Myotis brandtii Myotis_brandtii_T_10014749 N 0.000
T Myotis lucifugus ENSMLUG00000011294 N 0.000
ENSNLEG00000014917 Nomascus leucogenys ENSNLEG00000014917 I 0.000
Ocbimv22020340m.g Octopus bimaculoides Ocbimv22020340m.g N 0.000
ENSOANG00000012287 Ornithorhynchus anatinus ENSOANG00000012287 N 0.000
ENSPANG00000021432 Papio anubis ENSPANG00000021432 N 0.000