REB1 (Saccharomyces cerevisiae)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 YBR049C T282177_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Enables sequence-specific DNA binding activity. Involved in regulation of transcription by RNA polymerase II; termination of RNA polymerase II transcription; and transcriptional start site selection at RNA polymerase II promoter. Located in nucleoplasm. Orthologous to several human genes including DMTF1 (cyclin D binding myb like transcription factor 1). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
REB1
M00063_2.00
Saccharomyces cerevisiae
RTTACCCG

CGGGTAAY
PBM
Badis et al.(2008)
REB1_4402
(Direct) (Direct)
REB1
M07491_2.00
Saccharomyces cerevisiae
RTTACCCKN

NMGGGTAAY
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0363.1
(Direct) (Direct)
REB1
M07553_2.00
Saccharomyces cerevisiae
NVTTACCCKVH

DBMGGGTAABN
ChIP-exo
Rhee et al.(2011)
Reb1_1
(Direct) (Direct)
REB1
M07554_2.00
Saccharomyces cerevisiae
YACCACWMCCACWYACCMHMC

GKDKGGTRWGTGGKWGTGGTR
ChIP-exo
Rhee et al.(2011)
Reb1_2
(Direct) (Direct)
REB1
M07555_2.00
Saccharomyces cerevisiae
TYTCACATTCCACTCCAYKSC

GSMRTGGAGTGGAATGTGARA
ChIP-exo
Rhee et al.(2011)
Reb1_3
(Direct) (Direct)
REB1
M08593_2.00
Saccharomyces cerevisiae
RTTACCCGSMHDD

HHDKSCGGGTAAY
Misc
DeBoer et al.(2011)
YBR049C_907
(Direct) (Direct)
REB1
M11062_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$REB1_B
(Direct) (Direct)
REB1
M11063_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$REB1_Q5
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M00063_2.00 Myb 475 519
M00063_2.00 Myb 527 545
M00063_2.00 Myb 668 717

DNA Binding Domains

Protein ID Domain From To Sequence
YBR049C Myb 475 519
YBR049C Myb 527 545
YBR049C Myb 668 717

Links

Other Myb/SANT family TFs
Other Saccharomyces cerevisiae TFs

Invalid Input OrderBy

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action