CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava14699.m1
(
Manihot esculenta
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
cassava14699.m1
T284013_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB58
M07005_2.00
Arabidopsis thaliana
NNYYYACCWAMCHHH
DDDGKTWGGTRRRNN
Dap-seq
OMalley et al.(2016)
MYB58_col_a
0.691
0.710
MYB58
M07006_2.00
Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH
DNNNNDDDGKTWGGTRDRNND
Dap-seq
OMalley et al.(2016)
MYB58_colamp_a
0.691
0.710
AtMYB10
M07081_2.00
Arabidopsis thaliana
YYYACCWAMCHHHHNH
DNDDDDGKTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB10_col_a
0.661
0.677
AtMYB10
M07082_2.00
Arabidopsis thaliana
NYYYACCWAMCHHH
DDDGKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB10_colamp_a
0.661
0.677
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava14699.m1
Myb
14
61
KGSWNKEEDDKLRDYIQKYGHWNWRELPKYAGLSRCGKSCRLRWVNYL
cassava14699.m1
Myb
67
112
HGNFSKEEDDLIIQLHQELGNKWSRIATKLPGRTDNDIKNHWHTHL
Links
Other
Myb/SANT
family TFs
Other
Manihot esculenta
TFs
176 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy