CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cucsa.138770
(
Cucumis sativus
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cucsa.138770
T284432_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
TRP5
M01266_2.00
Arabidopsis thaliana
NHWAAACCYH
DRGGTTTWDN
PBM
Lambert et al.(2019)
pTH9963
0.760
0.915
PK21687.1
M01282_2.00
Cannabis sativa
HWAAACCYH
DRGGTTTWD
PBM
Lambert et al.(2019)
pTH11299
0.760
0.915
TRP2
M07092_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCC
GGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP2_col_a
0.752
0.894
TRP2
M07093_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCCT
AGGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP2_colamp_a
0.752
0.894
TRP1
M07148_2.00
Arabidopsis thaliana
AAACCCTAAACCCTAAACCCTAA
TTAGGGTTTAGGGTTTAGGGTTT
Dap-seq
OMalley et al.(2016)
TRP1_col
0.742
0.894
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.138770.1
Myb
422
472
RRPFSVDEVEALVHAVETLGPGRWRDVKLRAFDNVKHRTYVDLKDKWKTLV
Cucsa.138770.2
Myb
422
472
RRPFSVDEVEALVHAVETLGPGRWRDVKLRAFDNVKHRTYVDLKDKWKTLV
Cucsa.138770.3
Myb
422
472
RRPFSVDEVEALVHAVETLGPGRWRDVKLRAFDNVKHRTYVDLKDKWKTLV
Cucsa.138770.4
Myb
422
472
RRPFSVDEVEALVHAVETLGPGRWRDVKLRAFDNVKHRTYVDLKDKWKTLV
Links
Other
Myb/SANT
family TFs
Other
Cucumis sativus
TFs
197 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy