gw1.2.1819.1 (Fragilariopsis cylindrus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gw1.2.1819.1 T285080_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Thaps24118
M02334_2.00 		Thalassiosira pseudonana
NNAYCHDNN
NNHDGRTNN		 PBM
Weirauch et al.(2014)
pTH7881 		0.775 0.932
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw1.2.1819.1 Myb 1 44

Links

Other Myb/SANT family TFs
Other Fragilariopsis cylindrus TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Thaps24118 Thalassiosira pseudonana Thaps24118 D 0.775
Phatr3_EG01922 Phaeodactylum tricornutum Phatr3_EG01922 I 0.767
Phatr3_EG02570 Phaeodactylum tricornutum Phatr3_EG02570 I 0.767
ALNC14_059010 Albugo laibachii ALNC14_059010 N 0.706
maker-piw_contig_292-fgenesh-gene-0.2 Pythium iwayamai maker-piw_contig_292-fgenesh-gene-0.2 N 0.696
maker-pir_contig_380-snap-gene-0.13 Pythium irregulare maker-pir_contig_380-snap-gene-0.13 N 0.696
snap_masked-par_contig_136-abinit-gene-0.22 Pythium arrhenomanes snap_masked-par_contig_136-abinit-gene-0.22 N 0.696
PYU1_G000358 Pythium ultimum PYU1_G000358 N 0.690
EHI_135150 Entamoeba histolytica EHI_135150 N 0.687
EDI_336820 Entamoeba dispar EDI_336820 N 0.687
gw1.4.847.1 Fragilariopsis cylindrus gw1.4.847.1 N 0.665