CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.7867s1551
(
Boechera stricta
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Bostr.7867s1551
T285917_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HHO5
M07112_2.00
Arabidopsis thaliana
HNDAAGATTCH
DGAATCTTHND
Dap-seq
OMalley et al.(2016)
AT4G37180_col_a
0.860
0.957
HHO5
M07113_2.00
Arabidopsis thaliana
NNDAAGATTCY
RGAATCTTHNN
Dap-seq
OMalley et al.(2016)
AT4G37180_colamp_a
0.860
0.957
HHO3
M02289_2.00
Arabidopsis thaliana
NWGATWCBNN
NNVGWATCWN
PBM
Weirauch et al.(2014)
pTH7278
0.714
0.809
HHO3
M07016_2.00
Arabidopsis thaliana
NNDHNNAAKATTCY
RGAATMTTNNDHNN
Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a
0.714
0.809
HHO3
M07017_2.00
Arabidopsis thaliana
HNNAAKATTCY
RGAATMTTNND
Dap-seq
OMalley et al.(2016)
At1g25550_col
0.714
0.809
EFM
M07044_2.00
Arabidopsis thaliana
NNGAATATTCY
RGAATATTCNN
Dap-seq
OMalley et al.(2016)
At2g03500_col_a
0.711
0.830
EFM
M07045_2.00
Arabidopsis thaliana
RGAATCHWAGATTC
GAATCTWDGATTCY
Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a
0.711
0.830
NIGT1
M02328_2.00
Oryza sativa
NNKATHCNNN
NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH8646
0.705
0.766
HRS1
M02284_2.00
Arabidopsis thaliana
AGATTCYN
NRGAATCT
PBM
Weirauch et al.(2014)
pTH7118
0.703
0.787
HRS1
M01068_2.00
Arabidopsis thaliana
NAGATTCBNN
NNVGAATCTN
PBM
Sullivan et al.(2014)
pTH7648
0.703
0.787
HRS1
M07004_2.00
Arabidopsis thaliana
NDDWWVNAAKATTCY
RGAATMTTNBWWHHN
Dap-seq
OMalley et al.(2016)
At1g13300_col_a
0.703
0.787
HHO2
M02290_2.00
Arabidopsis thaliana
NNKATHCNNN
NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH7115
0.696
0.787
HHO2
M07029_2.00
Arabidopsis thaliana
AKATTCY
RGAATMT
Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a
0.696
0.787
HHO2
M07030_2.00
Arabidopsis thaliana
RDATYNNAGATTC
GAATCTNNRATHY
Dap-seq
OMalley et al.(2016)
At1g68670_col
0.696
0.787
PK19779.1
M02354_2.00
Cannabis sativa
NNKATNCNNN
NNNGNATMNN
PBM
Weirauch et al.(2014)
pTH9610
0.687
0.766
HHO6
M07024_2.00
Arabidopsis thaliana
GAATCTNNDAT
ATHNNAGATTC
Dap-seq
OMalley et al.(2016)
AT1G49560_col_a
0.669
0.787
HHO6
M07025_2.00
Arabidopsis thaliana
DGAATCTHNGATHCN
NGDATCNDAGATTCH
Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a
0.669
0.787
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.7867s1551.1.p
Myb
209
260
RRRWSQDLHRIFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYR
Bostr.7867s1551.2.p
Myb
209
260
RRRWSQDLHRIFVDALHRLGGPQVATPKQIRDLMKVDGLTNDEVKSHLQKYR
Links
Other
Myb/SANT
family TFs
Other
Boechera stricta
TFs
334 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy