CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.3745s0008
(
Capsella grandiflora
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Cagra.3745s0008
T286125_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB80
M07142_2.00
Arabidopsis thaliana
NYYYACCTAMYWHNN
NNDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MS188_col_a
0.909
1.000
MYB80
M07143_2.00
Arabidopsis thaliana
YYYACCTAMYTWNNN
NNNWARKTAGGTRRR
Dap-seq
OMalley et al.(2016)
MS188_colamp_a
0.909
1.000
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.3745s0008.1.p
Myb
14
61
RGQWTPEEDNKLASYIAQHGTRNWRLIPKNAGLQRCGKSCRLRWTNYL
Cagra.3745s0008.1.p
Myb
67
112
HGQFSEAEEHIIVKFHSVLGNRWSLIAAQLPGRTDNDVKNYWNTKL
Links
Other
Myb/SANT
family TFs
Other
Capsella grandiflora
TFs
112 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy