Cagra.6594s0025 (Capsella grandiflora)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Cagra.6594s0025 T286181_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RVE5
M01079_2.00
Arabidopsis thaliana
NWAATATCHN

NDGATATTWN
PBM
Sullivan et al.(2014)
pTH7138
0.875 0.978
RVE5
M07100_2.00
Arabidopsis thaliana
NNAAAATATCT

AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At4g01280_col_a
0.875 0.978
RVE5
M07101_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At4g01280_colamp_a
0.875 0.978
PK02532.1
M02347_2.00
Cannabis sativa
WAATATCTN

NAGATATTW
PBM
Weirauch et al.(2014)
pTH9579
0.837 0.913
RVE8
M01074_2.00
Arabidopsis thaliana
NNNRWATCNN

NNGATWYNNN
PBM
Sullivan et al.(2014)
pTH7136
0.829 0.891
RVE8
M07069_2.00
Arabidopsis thaliana
NHNWAAATATCT

AGATATTTWNDN
Dap-seq
OMalley et al.(2016)
At3g09600_col_a
0.829 0.891
RVE8
M07070_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
At3g09600_colamp_a
0.829 0.891
RVE4
M07117_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LCL1_colamp_a
0.829 0.891
RVE4
M07118_2.00
Arabidopsis thaliana
NAAAATATCT

AGATATTTTN
Dap-seq
OMalley et al.(2016)
LCL1_col
0.829 0.891
RVE6
M01081_2.00
Arabidopsis thaliana
AATATCTD

HAGATATT
PBM
Sullivan et al.(2014)
pTH7151
0.827 0.891
RVE6
M07138_2.00
Arabidopsis thaliana
NNAAAATATCT

AGATATTTTNN
Dap-seq
OMalley et al.(2016)
At5g52660_col_a
0.827 0.891
RVE6
M07139_2.00
Arabidopsis thaliana
NNNWAAATATCT

AGATATTTWNNN
Dap-seq
OMalley et al.(2016)
At5g52660_colamp_a
0.827 0.891
mybG
M02319_2.00
Dictyostelium discoideum
WAATATCT

AGATATTW
PBM
Weirauch et al.(2014)
pTH5362
0.808 0.870
PK08316.1
M02350_2.00
Cannabis sativa
NNNRWATCNN

NNGATWYNNN
PBM
Weirauch et al.(2014)
pTH9488
0.747 0.717
RVE1
M00879_2.00
Arabidopsis thaliana
AAATATCT

AGATATTT
PBM
Franco-Zorrilla et al.(2014)
RVE1
0.711 0.674
RVE1
M07128_2.00
Arabidopsis thaliana
NNNWAAATATCTNN

NNAGATATTTWNNN
Dap-seq
OMalley et al.(2016)
RVE1_col_a
0.711 0.674
RVE1
M07129_2.00
Arabidopsis thaliana
NNWAATATCW

WGATATTWNN
Dap-seq
OMalley et al.(2016)
RVE1_colamp_a
0.711 0.674
OS08G0157600
M02330_2.00
Oryza sativa
DNRTATCHN

NDGATAYNH
PBM
Weirauch et al.(2014)
pTH7793
0.691 0.674
LHY
M06997_2.00
Arabidopsis thaliana
NWAAATATCT

AGATATTTWN
Dap-seq
OMalley et al.(2016)
LHY1_col_a
0.681 0.652
LHY
M06998_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
LHY1_colamp_a
0.681 0.652
RVE7
M01069_2.00
Arabidopsis thaliana
NDHRWATCNN

NNGATWYDHN
PBM
Sullivan et al.(2014)
pTH7081
0.668 0.609
RVE7
M02286_2.00
Arabidopsis thaliana
NDARTATCH

DGATAYTHN
PBM
Weirauch et al.(2014)
pTH7277
0.668 0.609
RVE7L
M07071_2.00
Arabidopsis thaliana
NNNNWAAATATCWNN

NNWGATATTTWNNNN
Dap-seq
OMalley et al.(2016)
AT3G10113_col_a
0.668 0.609
RVE7
M07008_2.00
Arabidopsis thaliana
NNWAAATATCT

AGATATTTWNN
Dap-seq
OMalley et al.(2016)
EPR1_colamp_a
0.668 0.609
RVE7
M07009_2.00
Arabidopsis thaliana
NWAAATATCTHN

NDAGATATTTWN
Dap-seq
OMalley et al.(2016)
EPR1_col
0.668 0.609
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.6594s0025.1.p Myb 80 125
Cagra.6594s0025.2.p Myb 80 125

Links

Other Myb/SANT family TFs
Other Capsella grandiflora TFs

431 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
VDBG_09098 Verticillium alfalfae VDBG_09098 N 0.000