gene30024-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene30024-v1.0-hybrid T287407_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB106
M11040_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G01140_01
0.817 0.806
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH

DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.790 0.839
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH

DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.790 0.839
AtMYB93
M07020_2.00
Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH

DDDDDDDDRKTWGKTRRRNHD
Dap-seq
OMalley et al.(2016)
MYB93_col_a
0.774 0.903
AtMYB93
M07021_2.00
Arabidopsis thaliana
NNHNBYYYAMCWAMY

RKTWGKTRRRVNDNN
Dap-seq
OMalley et al.(2016)
MYB93_colamp_a
0.774 0.903
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY

RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.756 0.839
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH

DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.756 0.839
MYB39
M07106_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH

DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_col_a
0.713 0.763
MYB39
M07107_2.00
Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH

DNDDDDDDDWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_colamp_a
0.713 0.763
MYB49
M07140_2.00
Arabidopsis thaliana
HDBBYYACCWAMYWH

DWRKTWGGTRRVVHD
Dap-seq
OMalley et al.(2016)
MYB49_col_a
0.682 0.796
MYB49
M07141_2.00
Arabidopsis thaliana
NYYYACCTAMYWHN

NDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB49_colamp_a
0.682 0.796
ATMYB13
M06999_2.00
Arabidopsis thaliana
HYCACCWACCHHHNH

DNDDDGGTWGGTGRD
Dap-seq
OMalley et al.(2016)
MYB13_col_a
0.670 0.731
ATMYB13
M07000_2.00
Arabidopsis thaliana
BYCACCWACCHHHNNHNN

NNDNNDDDGGTWGGTGRV
Dap-seq
OMalley et al.(2016)
MYB13_colamp_a
0.670 0.731
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH

DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.667 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna30024.1-v1.0-hybrid Myb 14 61
mrna30024.1-v1.0-hybrid Myb 67 112

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

592 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAPLG00000003593 Anas platyrhynchos ENSAPLG00000003593 I 0.000
ANCCAN_07722 Ancylostoma caninum ANCCAN_07722 N 0.000
ANCDUO_02619 Ancylostoma duodenale ANCDUO_02619 N 0.000
ENSAMXG00000016040 Astyanax mexicanus ENSAMXG00000016040 I 0.000
DME_0000390001 Dracunculus medinensis DME_0000390001 N 0.000
GF20577 Drosophila ananassae FBgn0097583 I 0.000
GG24457 Drosophila erecta FBgn0116589 I 0.000
GH10284 Drosophila grimshawi FBgn0117765 I 0.000
Mad Drosophila melanogaster FBgn0011648 D 0.000
GI17981 Drosophila mojavensis FBgn0140721 I 0.000
GL26531 Drosophila persimilis FBgn0164113 I 0.000
GA28973 Drosophila pseudoobscura FBgn0250331 I 0.000
GM18164 Drosophila sechellia FBgn0173071 I 0.000
GD22774 Drosophila simulans FBgn0194168 I 0.000
GJ19553 Drosophila virilis FBgn0206695 I 0.000
GK18268 Drosophila willistoni FBgn0220267 I 0.000
GE14935 Drosophila yakuba FBgn0232525 I 0.000
HelroG186716 Helobdella robusta HelroG186716 I 0.000
ENSLACG00000011178 Latimeria chalumnae ENSLACG00000011178 I 0.000
maker-nMf.1.1.scaf00076-augustus-gene-0.21 Meloidogyne floridensis maker-nMf.1.1.scaf00076-augustus-gene-0.21 N 0.000
Minc06478 Meloidogyne incognita Minc06478 N 0.000
MDOA015236 Musca domestica MDOA015236 I 0.000
MDOA012257 Musca domestica MDOA012257 I 0.000
Myotis_brandtii_SMAD9_10010468 Myotis brandtii Myotis_brandtii_SMAD9_10010468 I 0.000
SMAD9 Myotis lucifugus ENSMLUG00000006399 I 0.000
NECAME_19535 Necator americanus NECAME_19535 N 0.000
NBR_0000522801 Nippostrongylus brasiliensis NBR_0000522801 I 0.000
SMAD5 Ornithorhynchus anatinus ENSOANG00000009906 I 0.000
ENSPMAG00000009833 Petromyzon marinus ENSPMAG00000009833 I 0.000
Ppa-sma-2 Pristionchus pacificus PPA15247 N 0.000
SMAD9 Procavia capensis ENSPCAG00000002604 I 0.000
RPRC008357 Rhodnius prolixus RPRC008357 I 0.000
L892_g4529 Steinernema scapterisci L892_g4529 N 0.000
D918_06928 Trichuris suis D918_06928 I 0.000
TTRE_0000645601 Trichuris trichiura TTRE_0000645601 I 0.000
SMAD1 Vicugna pacos ENSVPAG00000003340 I 0.000
L798_03803 Zootermopsis nevadensis L798_03803 I 0.000