gene30024-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene30024-v1.0-hybrid T287407_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB106
M11040_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G01140_01
0.817 0.806
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH

DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.790 0.839
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH

DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.790 0.839
AtMYB93
M07020_2.00
Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH

DDDDDDDDRKTWGKTRRRNHD
Dap-seq
OMalley et al.(2016)
MYB93_col_a
0.774 0.903
AtMYB93
M07021_2.00
Arabidopsis thaliana
NNHNBYYYAMCWAMY

RKTWGKTRRRVNDNN
Dap-seq
OMalley et al.(2016)
MYB93_colamp_a
0.774 0.903
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY

RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.756 0.839
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH

DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.756 0.839
MYB39
M07106_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH

DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_col_a
0.713 0.763
MYB39
M07107_2.00
Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH

DNDDDDDDDWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_colamp_a
0.713 0.763
MYB49
M07140_2.00
Arabidopsis thaliana
HDBBYYACCWAMYWH

DWRKTWGGTRRVVHD
Dap-seq
OMalley et al.(2016)
MYB49_col_a
0.682 0.796
MYB49
M07141_2.00
Arabidopsis thaliana
NYYYACCTAMYWHN

NDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB49_colamp_a
0.682 0.796
ATMYB13
M06999_2.00
Arabidopsis thaliana
HYCACCWACCHHHNH

DNDDDGGTWGGTGRD
Dap-seq
OMalley et al.(2016)
MYB13_col_a
0.670 0.731
ATMYB13
M07000_2.00
Arabidopsis thaliana
BYCACCWACCHHHNNHNN

NNDNNDDDGGTWGGTGRV
Dap-seq
OMalley et al.(2016)
MYB13_colamp_a
0.670 0.731
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH

DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.667 0.720
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna30024.1-v1.0-hybrid Myb 14 61
mrna30024.1-v1.0-hybrid Myb 67 112

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

592 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000017547 Ailuropoda melanoleuca ENSAMEG00000017547 I 0.000
THAP11 Anolis carolinensis ENSACAG00000001520 I 0.000
ENSAMXG00000025848 Astyanax mexicanus ENSAMXG00000025848 I 0.000
ENSBTAP00000008406-D1 Bos grunniens ENSBTAP00000008406-D1 I 0.000
THAP11 Bos taurus ENSBTAG00000006411 I 0.000
THAP11 Canis familiaris ENSCAFG00000020344 I 0.000
ENSCSAG00000018473 Chlorocebus sabaeus ENSCSAG00000018473 I 0.000
THAP11 Choloepus hoffmanni ENSCHOG00000008297 I 0.000
thap11 Danio rerio ENSDARG00000036055 I 0.000
THAP11 Dasypus novemcinctus ENSDNOG00000009718 I 0.000
THAP11 Felis catus ENSFCAG00000012850 I 0.000
ENSFALG00000007023 Ficedula albicollis ENSFALG00000007023 I 0.000
thap11 Gasterosteus aculeatus ENSGACG00000015879 I 0.000
THAP11 Gorilla gorilla ENSGGOG00000013846 I 0.000
THAP11 Homo sapiens ENSG00000168286 D 0.000
ENSSTOG00000021807 Ictidomys tridecemlineatus ENSSTOG00000021807 I 0.000
ENSLACG00000016376 Latimeria chalumnae ENSLACG00000016376 I 0.000
ENSLOCG00000017596 Lepisosteus oculatus ENSLOCG00000017596 I 0.000
THAP11 Macaca mulatta ENSMMUG00000013240 I 0.000
THAP11 Microcebus murinus ENSMICG00000012247 I 0.000
THAP11 Monodelphis domestica ENSMODG00000005522 I 0.000
ENSMPUG00000019895 Mustela putorius furo ENSMPUG00000019895 I 0.000
Thap11 Mus musculus ENSMUSG00000036442 D 0.000
Myotis_brandtii_Thap11_10015084 Myotis brandtii Myotis_brandtii_Thap11_10015084 I 0.000
THAP11 Myotis lucifugus ENSMLUG00000005845 I 0.000
ENSONIG00000021394 Oreochromis niloticus ENSONIG00000021394 I 0.000
THAP11 Ornithorhynchus anatinus ENSOANG00000006140 I 0.000
THAP11 Oryctolagus cuniculus ENSOCUG00000009342 I 0.000
thap11 Oryzias latipes ENSORLG00000008903 I 0.000
THAP11 Otolemur garnettii ENSOGAG00000034339 I 0.000
ENSOARG00000010537 Ovis aries ENSOARG00000010537 I 0.000
THAP11 Pan troglodytes ENSPTRG00000008247 I 0.000
ENSPANG00000011972 Papio anubis ENSPANG00000011972 I 0.000
ENSPFOG00000020599 Poecilia formosa ENSPFOG00000020599 I 0.000
Pvit_14747 Pogona vitticeps Pvit_14747 I 0.000
ENSPPYG00000007471 Pongo abelii ENSPPYG00000007471 I 0.000
THAP11 Pteropus vampyrus ENSPVAG00000016604 I 0.000
Thap11 Rattus norvegicus ENSRNOG00000019109 I 0.000
THAP11 Sorex araneus ENSSARG00000013268 I 0.000
THAP11 Sus scrofa ENSSSCG00000002769 I 0.000
thap11 Tetraodon nigroviridis ENSTNIG00000009306 I 0.000
thap11.L Xenopus laevis XB-GENE-5954813 I 0.000
thap11 Xenopus tropicalis XB-GENE-5954792 I 0.000
ENSXMAG00000019795 Xiphophorus maculatus ENSXMAG00000019795 I 0.000