Gorai.013G040600 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.013G040600 T287802_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HHO6
M07024_2.00
Arabidopsis thaliana
GAATCTNNDAT

ATHNNAGATTC
Dap-seq
OMalley et al.(2016)
AT1G49560_col_a
0.876 0.915
HHO6
M07025_2.00
Arabidopsis thaliana
DGAATCTHNGATHCN

NGDATCNDAGATTCH
Dap-seq
OMalley et al.(2016)
AT1G49560_colamp_a
0.876 0.915
NIGT1
M02328_2.00
Oryza sativa
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH8646
0.863 0.915
HHO3
M02289_2.00
Arabidopsis thaliana
NWGATWCBNN

NNVGWATCWN
PBM
Weirauch et al.(2014)
pTH7278
0.855 0.915
HHO3
M07016_2.00
Arabidopsis thaliana
NNDHNNAAKATTCY

RGAATMTTNNDHNN
Dap-seq
OMalley et al.(2016)
At1g25550_colamp_a
0.855 0.915
HHO3
M07017_2.00
Arabidopsis thaliana
HNNAAKATTCY

RGAATMTTNND
Dap-seq
OMalley et al.(2016)
At1g25550_col
0.855 0.915
HHO2
M02290_2.00
Arabidopsis thaliana
NNKATHCNNN

NNNGDATMNN
PBM
Weirauch et al.(2014)
pTH7115
0.837 0.915
HHO2
M07029_2.00
Arabidopsis thaliana
AKATTCY

RGAATMT
Dap-seq
OMalley et al.(2016)
At1g68670_colamp_a
0.837 0.915
HHO2
M07030_2.00
Arabidopsis thaliana
RDATYNNAGATTC

GAATCTNNRATHY
Dap-seq
OMalley et al.(2016)
At1g68670_col
0.837 0.915
PK19779.1
M02354_2.00
Cannabis sativa
NNKATNCNNN

NNNGNATMNN
PBM
Weirauch et al.(2014)
pTH9610
0.814 0.915
PK14402.1
M02352_2.00
Cannabis sativa
NDWGATTCSNN

NNSGAATCWHN
PBM
Weirauch et al.(2014)
pTH9491
0.814 0.894
EFM
M07044_2.00
Arabidopsis thaliana
NNGAATATTCY

RGAATATTCNN
Dap-seq
OMalley et al.(2016)
At2g03500_col_a
0.810 0.915
EFM
M07045_2.00
Arabidopsis thaliana
RGAATCHWAGATTC

GAATCTWDGATTCY
Dap-seq
OMalley et al.(2016)
At2g03500_colamp_a
0.810 0.915
HRS1
M02284_2.00
Arabidopsis thaliana
AGATTCYN

NRGAATCT
PBM
Weirauch et al.(2014)
pTH7118
0.736 0.851
HRS1
M01068_2.00
Arabidopsis thaliana
NAGATTCBNN

NNVGAATCTN
PBM
Sullivan et al.(2014)
pTH7648
0.736 0.851
HRS1
M07004_2.00
Arabidopsis thaliana
NDDWWVNAAKATTCY

RGAATMTTNBWWHHN
Dap-seq
OMalley et al.(2016)
At1g13300_col_a
0.736 0.851
HHO5
M07112_2.00
Arabidopsis thaliana
HNDAAGATTCH

DGAATCTTHND
Dap-seq
OMalley et al.(2016)
AT4G37180_col_a
0.672 0.809
HHO5
M07113_2.00
Arabidopsis thaliana
NNDAAGATTCY

RGAATCTTHNN
Dap-seq
OMalley et al.(2016)
AT4G37180_colamp_a
0.672 0.809
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.013G040600.1 Myb 262 313
Gorai.013G040600.2 Myb 179 230

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

366 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA13G42100 Glycine max GLYMA13G42100 N 0.000
Ciclev10020072m.g Citrus clementina Ciclev10020072m.g N 0.000
Eucgr.A00109 Eucalyptus grandis Eucgr.A00109 N 0.000
evm.TU.supercontig_9.323 Carica papaya evm.TU.supercontig_9.323 N 0.000
Gorai.011G140100 Gossypium raimondii Gorai.011G140100 N 0.000
Gorai.011G140300 Gossypium raimondii Gorai.011G140300 N 0.000
SapurV1A.0485s0200 Salix purpurea SapurV1A.0485s0200 N 0.000
SapurV1A.0791s0060 Salix purpurea SapurV1A.0791s0060 N 0.000
SapurV1A.0865s0070 Salix purpurea SapurV1A.0865s0070 N 0.000
SapurV1A.0865s0080 Salix purpurea SapurV1A.0865s0080 N 0.000
SapurV1A.1272s0060 Salix purpurea SapurV1A.1272s0060 N 0.000
SapurV1A.1357s0040 Salix purpurea SapurV1A.1357s0040 N 0.000
PK11022.1 Cannabis sativa PK11022.1 N 0.000
Aquca_058_00064 Aquilegia coerulea Aquca_058_00064 N 0.000
mgf025327m Mimulus guttatus mgf025327m N 0.000
Cucsa.362140 Cucumis sativus Cucsa.362140 N 0.000
GLYMA15G03290 Glycine max GLYMA15G03290 N 0.000
PGSC0003DMG400014615 Solanum tuberosum PGSC0003DMG400014615 N 0.000
POPTR_0007s01650 Populus trichocarpa POPTR_0007s01650 N 0.000
POPTR_0017s05450 Populus trichocarpa POPTR_0017s05450 N 0.000
PRUPE_ppa1027119mg Prunus persica PRUPE_ppa1027119mg N 0.000
Solyc08g014030.1 Solanum lycopersicum Solyc08g014030.1 N 0.000
TCM_019978 Theobroma cacao TCM_019978 N 0.000
VIT_00s0226g00070 Vitis vinifera VIT_00s0226g00070 N 0.000
Ca_02696 Cicer arietinum Ca_02696 N 0.000
Cla007135 Citrullus lanatus Cla007135 N 0.000
Pm007259 Prunus mume Pm007259 N 0.000
cassava11920.valid.m1 Manihot esculenta cassava11920.valid.m1 N 0.000
chr3.CM0106.470.nd Lotus japonicus chr3.CM0106.470.nd N 0.000