Lus10027459.g (Linum usitatissimum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Lus10027459.g T288094_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY

RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.720 0.699
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH

DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.720 0.699
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH

DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.692 0.731
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH

DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.674 0.699
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH

DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.674 0.699
AtMYB93
M07020_2.00
Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH

DDDDDDDDRKTWGKTRRRNHD
Dap-seq
OMalley et al.(2016)
MYB93_col_a
0.664 0.699
AtMYB93
M07021_2.00
Arabidopsis thaliana
NNHNBYYYAMCWAMY

RKTWGKTRRRVNDNN
Dap-seq
OMalley et al.(2016)
MYB93_colamp_a
0.664 0.699
MYB106
M11040_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G01140_01
0.662 0.677
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10027459 Myb 14 61
Lus10027459 Myb 67 112

Links

Other Myb/SANT family TFs
Other Linum usitatissimum TFs

419 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GRMZM2G362557 Zea mays GRMZM2G362557 N 0.000
Sb07g014876 Sorghum bicolor Sb07g014876 N 0.000
Sb08g005616 Sorghum bicolor Sb08g005616 N 0.000
Sb10g011520 Sorghum bicolor Sb10g011520 N 0.000
Pavir.Ab01384 Panicum virgatum Pavir.Ab01384 N 0.000
Pavir.Ba00900 Panicum virgatum Pavir.Ba00900 N 0.000
Pavir.Hb01043 Panicum virgatum Pavir.Hb01043 N 0.000
Pavir.Hb01581 Panicum virgatum Pavir.Hb01581 N 0.000
Pavir.Ib02562 Panicum virgatum Pavir.Ib02562 N 0.000
Pavir.J08193 Panicum virgatum Pavir.J08193 N 0.000
Sb05g007535 Sorghum bicolor Sb05g007535 N 0.000
Sb05g004780 Sorghum bicolor Sb05g004780 N 0.000
GRMZM2G454472 Zea mays GRMZM2G454472 N 0.000
Sb01g013490 Sorghum bicolor Sb01g013490 N 0.000
Sb01g024553 Sorghum bicolor Sb01g024553 N 0.000
Sb01g027440 Sorghum bicolor Sb01g027440 N 0.000
Sb01g047190 Sorghum bicolor Sb01g047190 N 0.000
Sb02g011140 Sorghum bicolor Sb02g011140 N 0.000
Sb02g013136 Sorghum bicolor Sb02g013136 N 0.000
Sb04g008820 Sorghum bicolor Sb04g008820 N 0.000
Sb04g017410 Sorghum bicolor Sb04g017410 N 0.000
Pavir.J10621 Panicum virgatum Pavir.J10621 N 0.000