CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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orange1.1g020197m.g
(
Citrus sinensis
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
orange1.1g020197m.g
T288817_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
MYB108
M07065_2.00
Arabidopsis thaliana
RCCWAAYYNNNNHNH
DNDNNNNRRTTWGGY
Dap-seq
OMalley et al.(2016)
BOS1_col_a
0.832
0.880
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.728
0.804
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.728
0.804
MYB116
M07014_2.00
Arabidopsis thaliana
NRCCTAAYTWNWNNN
NNNWNWARTTAGGYN
Dap-seq
OMalley et al.(2016)
MYB116_col_a
0.695
0.761
MYB116
M07015_2.00
Arabidopsis thaliana
HNTRCCTAACTHH
DDAGTTAGGYAND
Dap-seq
OMalley et al.(2016)
MYB116_colamp_a
0.695
0.761
MYB57
M01072_2.00
Arabidopsis thaliana
RCCTAAYT
ARTTAGGY
PBM
Sullivan et al.(2014)
pTH9748
0.673
0.750
MYB57
M07059_2.00
Arabidopsis thaliana
YNTACCTAACTHHH
DDDAGTTAGGTANR
Dap-seq
OMalley et al.(2016)
MYB57_col_a
0.673
0.750
MYB57
M07060_2.00
Arabidopsis thaliana
ACCTAAY
RTTAGGT
Dap-seq
OMalley et al.(2016)
MYB57_colamp_a
0.673
0.750
MYB05_ANTMA
M11067_2.00
Antirrhinum majus
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB305_Q3
0.672
0.815
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
orange1.1g020197m
Myb
110
157
KGPWTVEEDFKLINYIVTHGEGRWNRLARCAGLKRTGKSCRLRWLNYL
orange1.1g020197m
Myb
164
208
GKITLEEQLLILELHSRWGNRWSKLAQHLPGRTDNEIKNYWRTRV
Links
Other
Myb/SANT
family TFs
Other
Citrus sinensis
TFs
495 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy