CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ga02684
(
Panicum virgatum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Pavir.Ga02684
T289220_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAX3
M02700_2.00
Arabidopsis thaliana
SCACCTACCHCCN
NGGDGGTAGGTGS
SELEX
Mathelier et al.(2014)
MA0576.1
0.739
0.817
RAX3
M11043_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB84_01
0.739
0.817
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ga02684.1.p
Myb
14
62
KGPWSPEEDAKLKEFIEKHGTGGNWIALPQKAGLRRCGKSCRLRWLNYL
Pavir.Ga02684.1.p
Myb
68
113
HGEFTEQEDRVICSMYASIGSRWSIIASQLPGRTDNDIKNYWNTKL
Pavir.Ga02684.2.p
Myb
10
30
QAFTRLRRCGKSCRLRWLNYL
Pavir.Ga02684.2.p
Myb
36
81
HGEFTEQEDRVICSMYASIGSRWSIIASQLPGRTDNDIKNYWNTKL
Links
Other
Myb/SANT
family TFs
Other
Panicum virgatum
TFs
444 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy