Pavir.J10197 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J10197 T289356_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Q5IWM2_WHEAT
M11059_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$MYB80_01
0.891 0.979
PHL7
M02292_2.00
Arabidopsis thaliana
NWGATDCBNN

NNVGHATCWN
PBM
Weirauch et al.(2014)
pTH7253
0.802 0.872
PK10342.1
M02351_2.00
Cannabis sativa
WAGATKCS

SGMATCTW
PBM
Weirauch et al.(2014)
pTH9489
0.802 0.872
PHL7
M07040_2.00
Arabidopsis thaliana
DRNAKATTCBNHNNN

NNNDNVGAATMTNYH
Dap-seq
OMalley et al.(2016)
At2g01060_colamp_a
0.802 0.872
PHL7
M07041_2.00
Arabidopsis thaliana
VGAATATTCBNHH

DDNVGAATATTCB
Dap-seq
OMalley et al.(2016)
At2g01060_col
0.802 0.872
UNE16
M01270_2.00
Arabidopsis thaliana
NWKATTCBNN

NNVGAATMWN
PBM
Lambert et al.(2019)
pTH9967
0.734 0.723
AT3G24120
M00729_2.00
Arabidopsis thaliana
NNKATDCBNN

NNVGHATMNN
PBM
Chang et al.(2013)
pTH7086
0.700 0.702
AT3G24120
M07085_2.00
Arabidopsis thaliana
HAKATTCB

VGAATMTD
Dap-seq
OMalley et al.(2016)
At3g24120_col_a
0.700 0.702
AT3G24120
M07086_2.00
Arabidopsis thaliana
NDRAAKATTCBHHN

NDDVGAATMTTYHN
Dap-seq
OMalley et al.(2016)
At3g24120_colamp_a
0.700 0.702
MYR1
M02309_2.00
Arabidopsis thaliana
NKATNCBNNN

NNNVGNATMN
PBM
Weirauch et al.(2014)
pTH8859
0.679 0.702
MYR2
M02294_2.00
Arabidopsis thaliana
NKATDCBNN

NNVGHATMN
PBM
Weirauch et al.(2014)
pTH7097
0.673 0.681
MYR2
M07063_2.00
Arabidopsis thaliana
NNDAAKATTCYHHN

NDDRGAATMTTHNN
Dap-seq
OMalley et al.(2016)
At3g04030_col_a
0.673 0.681
MYR2
M07064_2.00
Arabidopsis thaliana
VRAAKATTCBHWNNN

NNNWDVGAATMTTYB
Dap-seq
OMalley et al.(2016)
At3g04030_colamp_a
0.673 0.681
PHL1
M02310_2.00
Arabidopsis thaliana
NWKATNCBNN

NNVGNATMWN
PBM
Weirauch et al.(2014)
pTH7122
0.671 0.681
PHL1
M07132_2.00
Arabidopsis thaliana
MDRGAATATTCBNWN

NWNVGAATATTCYHK
Dap-seq
OMalley et al.(2016)
At5g29000_col_a
0.671 0.681
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J10197.1.p Myb 214 265
Pavir.J10197.2.p Myb 47 98

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

638 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ZNF329 Homo sapiens ENSG00000181894 D 0.000
ENSAMEG00000007380 Ailuropoda melanoleuca ENSAMEG00000007380 I 0.000
ENSNLEG00000019190 Nomascus leucogenys ENSNLEG00000019190 I 0.000
ZNF329 Oryctolagus cuniculus ENSOCUG00000002886 I 0.000
ZNF329 Otolemur garnettii ENSOGAG00000005636 I 0.000
ENSPANG00000012355 Papio anubis ENSPANG00000012355 I 0.000
ENSPPYG00000010492 Pongo abelii ENSPPYG00000010492 I 0.000
ZNF329 Pan troglodytes ENSPTRG00000011582 I 0.000
ZNF329 Pteropus vampyrus ENSPVAG00000002937 I 0.000
ZNF329 Sorex araneus ENSSARG00000004583 I 0.000
ENSTSYG00000003695 Tarsius syrichta ENSTSYG00000003695 I 0.000
ZNF329 Vicugna pacos ENSVPAG00000010098 I 0.000
ENSMPUG00000019115 Mustela putorius furo ENSMPUG00000019115 I 0.000
ZNF329 Macaca mulatta ENSMMUG00000020504 I 0.000
ENSMLUG00000014403 Myotis lucifugus ENSMLUG00000014403 I 0.000
ENSBTAG00000003465 Bos taurus ENSBTAG00000003465 I 0.000
ZNF329 Canis familiaris ENSCAFG00000031863 I 0.000
ZNF329 Callithrix jacchus ENSCJAG00000000347 I 0.000
ENSCSAG00000019663 Chlorocebus sabaeus ENSCSAG00000019663 I 0.000
ZNF329 Dasypus novemcinctus ENSDNOG00000007169 I 0.000
ZNF329 Equus caballus ENSECAG00000002408 I 0.000
ZNF329 Felis catus ENSFCAG00000009828 I 0.000
ZNF329 Gorilla gorilla ENSGGOG00000002485 I 0.000
ZNF329 Loxodonta africana ENSLAFG00000009318 I 0.000
ENSMICG00000017854 Microcebus murinus ENSMICG00000017854 I 0.000
ENSBTAP00000004507-D52 Bos grunniens ENSBTAP00000004507-D52 I 0.000