Pavir.J25237 (Panicum virgatum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Pavir.J25237 T289425_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK26523.1
M01283_2.00 		Cannabis sativa
NWHATTCYNN
NNRGAATDWN		 PBM
Lambert et al.(2019)
pTH11304 		0.734 0.881
AT2G40260
M07057_2.00 		Arabidopsis thaliana
HHWDWAHATTCYHTN
NADRGAATDTWHWDD		 Dap-seq
OMalley et al.(2016)
AT2G40260_col_a 		0.725 0.881
AT2G40260
M07058_2.00 		Arabidopsis thaliana
NNDDWHHNDDWAHATTCYHT
ADRGAATDTWHHNDDWHHNN		 Dap-seq
OMalley et al.(2016)
AT2G40260_colamp_a 		0.725 0.881
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J25237.1.p Myb 74 120

Links

Other Myb/SANT family TFs
Other Panicum virgatum TFs

242 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI4G26800 Brachypodium distachyon BRADI4G26800 I 0.799
Pavir.J16957 Panicum virgatum Pavir.J16957 I 0.799
Pavir.J01622 Panicum virgatum Pavir.J01622 I 0.799
F775_29879 Aegilops tauschii F775_29879 I 0.793
LPERR11G00400 Leersia perrieri LPERR11G00400 I 0.793
TRIUR3_10881 Triticum urartu TRIUR3_10881 I 0.793
Traes_4AL_72ECC7747 Triticum aestivum Traes_4AL_72ECC7747 I 0.793
Traes_4DS_99EC36CD4 Triticum aestivum Traes_4DS_99EC36CD4 I 0.793
BRADI4G44930 Brachypodium distachyon BRADI4G44930 I 0.781
GRMZM5G846506 Zea mays GRMZM5G846506 I 0.781
Si010342m.g Setaria italica Si010342m.g I 0.781
Sb08g000510 Sorghum bicolor Sb08g000510 I 0.781
Si026524m.g Setaria italica Si026524m.g I 0.781
OB11G10130 Oryza brachyantha OB11G10130 I 0.775
F775_13531 Aegilops tauschii F775_13531 I 0.771
TRIUR3_11585 Triticum urartu TRIUR3_11585 I 0.771
MLOC_72013 Hordeum vulgare MLOC_72013 I 0.771
Traes_5BL_0C6735099 Triticum aestivum Traes_5BL_0C6735099 I 0.771
Bo3g034850 Brassica oleracea Bo3g034850 I 0.765
Bra000180 Brassica rapa Bra000180 I 0.765
LjT01P07.20.nd Lotus japonicus LjT01P07.20.nd I 0.751
Pm009670 Prunus mume Pm009670 I 0.744
Sb05g000480 Sorghum bicolor Sb05g000480 I 0.741
cassava21831.m1 Manihot esculenta cassava21831.m1 I 0.734
MDP0000617021 Malus domestica MDP0000617021 I 0.734
TCM_042189 Theobroma cacao TCM_042189 I 0.734
cassava41268.m1 Manihot esculenta cassava41268.m1 I 0.734
Gorai.009G112300 Gossypium raimondii Gorai.009G112300 I 0.734
evm.TU.supercontig_19.148 Carica papaya evm.TU.supercontig_19.148 I 0.734
OB12G10410 Oryza brachyantha OB12G10410 I 0.734
cassava33845.m1 Manihot esculenta cassava33845.m1 I 0.734
Pm018961 Prunus mume Pm018961 I 0.734
SapurV1A.0905s0010 Salix purpurea SapurV1A.0905s0010 I 0.734
PRUPE_ppa025397mg Prunus persica PRUPE_ppa025397mg I 0.734
PDK_20s1498711g001 Phoenix dactylifera PDK_20s1498711g001 I 0.734
PK26523.1 Cannabis sativa PK26523.1 D 0.734
27757.m000022 Ricinus communis 27757.m000022 I 0.734
TCM_042463 Theobroma cacao TCM_042463 I 0.734
POPTR_0016s12940 Populus trichocarpa POPTR_0016s12940 I 0.734
AMTR_s00021p00013790 Amborella trichopoda AMTR_s00021p00013790 I 0.734
Ciclev10029989m.g Citrus clementina Ciclev10029989m.g I 0.734
orange1.1g041956m.g Citrus sinensis orange1.1g041956m.g I 0.734
OMERI11G00630 Oryza meridionalis OMERI11G00630 I 0.726
BGIOSGA036796 Oryza indica BGIOSGA036796 I 0.726
OBART11G00370 Oryza barthii OBART11G00370 I 0.726
OGLUM12G00290 Oryza glumaepatula OGLUM12G00290 I 0.726
OGLUM11G00320 Oryza glumaepatula OGLUM11G00320 I 0.726
OMERI11G00820 Oryza meridionalis OMERI11G00820 I 0.726
BGIOSGA036807 Oryza indica BGIOSGA036807 I 0.726
ORUFI11G00320 Oryza rufipogon ORUFI11G00320 I 0.726
ORUFI12G00420 Oryza rufipogon ORUFI12G00420 I 0.726
OS11G0106100 Oryza sativa OS11G0106100 I 0.726
OS12G0105600 Oryza sativa OS12G0105600 I 0.726
ORGLA11G0005200 Oryza glaberrima ORGLA11G0005200 I 0.726
OPUNC12G00380 Oryza punctata OPUNC12G00380 I 0.726
ONIVA12G00410 Oryza nivara ONIVA12G00410 I 0.726
OPUNC11G00360 Oryza punctata OPUNC11G00360 I 0.726
ONIVA11G00030 Oryza nivara ONIVA11G00030 I 0.726
Cagra.7053s0009 Capsella grandiflora Cagra.7053s0009 I 0.725
Carubv10023302m.g Capsella rubella Carubv10023302m.g I 0.725
Thhalv10016733m.g Eutrema salsugineum Thhalv10016733m.g I 0.725
Bo4g188940 Brassica oleracea Bo4g188940 I 0.725
AT2G40260 Arabidopsis thaliana AT2G40260 D 0.725
fgenesh1_pm.C_scaffold_4001775 Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001775 I 0.725
Eucgr.J00182 Eucalyptus grandis Eucgr.J00182 I 0.725
VIT_06s0004g07000 Vitis vinifera VIT_06s0004g07000 I 0.724
MTR_2g016220 Medicago truncatula MTR_2g016220 I 0.720
POPTR_0009s07890 Populus trichocarpa POPTR_0009s07890 I 0.719
POPTR_0001s28690 Populus trichocarpa POPTR_0001s28690 I 0.719
Cla014669 Citrullus lanatus Cla014669 I 0.719
MDP0000312944 Malus domestica MDP0000312944 I 0.719
GSMUA_Achr7G22410_001 Musa acuminata GSMUA_Achr7G22410_001 I 0.719
Cucsa.045140 Cucumis sativus Cucsa.045140 I 0.719
mgf017043m Mimulus guttatus mgf017043m I 0.719
Ca_00645 Cicer arietinum Ca_00645 I 0.716
SapurV1A.0650s0140 Salix purpurea SapurV1A.0650s0140 I 0.716
cassava15362.m1 Manihot esculenta cassava15362.m1 I 0.716
GLYMA09G00685 Glycine max GLYMA09G00685 I 0.716
GLYMA15G11576 Glycine max GLYMA15G11576 I 0.716
Ciclev10032941m.g Citrus clementina Ciclev10032941m.g I 0.716
Gorai.009G329400 Gossypium raimondii Gorai.009G329400 I 0.716
SapurV1A.0042s0270 Salix purpurea SapurV1A.0042s0270 I 0.716
orange1.1g029903m.g Citrus sinensis orange1.1g029903m.g I 0.716
PDK_20s1474441g001 Phoenix dactylifera PDK_20s1474441g001 I 0.716
PRUPE_ppa015662mg Prunus persica PRUPE_ppa015662mg I 0.716
POPTR_0010s19310 Populus trichocarpa POPTR_0010s19310 I 0.716
SELMODRAFT_438636 Selaginella moellendorffii SELMODRAFT_438636 I 0.710
SELMODRAFT_426960 Selaginella moellendorffii SELMODRAFT_426960 I 0.710
MTR_2g023580 Medicago truncatula MTR_2g023580 I 0.708
AMTR_s00025p00224230 Amborella trichopoda AMTR_s00025p00224230 I 0.708
PRUPE_ppa014847mg Prunus persica PRUPE_ppa014847mg I 0.705
MDP0000158654 Malus domestica MDP0000158654 I 0.705
Aquca_021_00207 Aquilegia coerulea Aquca_021_00207 I 0.705
OBART12G00180 Oryza barthii OBART12G00180 I 0.705
ORGLA12G0000900 Oryza glaberrima ORGLA12G0000900 I 0.705
evm.TU.supercontig_2794.2 Carica papaya evm.TU.supercontig_2794.2 I 0.704
SapurV1A.0061s0540 Salix purpurea SapurV1A.0061s0540 I 0.704
VIT_08s0058g00250 Vitis vinifera VIT_08s0058g00250 I 0.703
Ca_08598 Cicer arietinum Ca_08598 I 0.703
MTR_8g086410 Medicago truncatula MTR_8g086410 I 0.703
GLYMA13G30154 Glycine max GLYMA13G30154 I 0.703
Lus10012239.g Linum usitatissimum Lus10012239.g I 0.703
Lus10002207.g Linum usitatissimum Lus10002207.g I 0.703
GLYMA15G08970 Glycine max GLYMA15G08970 I 0.703
POPTR_0008s07170 Populus trichocarpa POPTR_0008s07170 I 0.702
29814.m000747 Ricinus communis 29814.m000747 I 0.701
VIT_13s0067g01500 Vitis vinifera VIT_13s0067g01500 I 0.700
MDP0000217637 Malus domestica MDP0000217637 I 0.699
29842.m003572 Ricinus communis 29842.m003572 I 0.698
estExt_fgenesh1_pg.C_550102 Physcomitrella patens estExt_fgenesh1_pg.C_550102 I 0.692
SELMODRAFT_424890 Selaginella moellendorffii SELMODRAFT_424890 I 0.692
SELMODRAFT_423935 Selaginella moellendorffii SELMODRAFT_423935 I 0.692
Lus10007513.g Linum usitatissimum Lus10007513.g I 0.691
Lus10017442.g Linum usitatissimum Lus10017442.g I 0.691
MTR_7g069660 Medicago truncatula MTR_7g069660 I 0.691
Aquca_002_01368 Aquilegia coerulea Aquca_002_01368 I 0.689
evm.TU.supercontig_2.82 Carica papaya evm.TU.supercontig_2.82 I 0.689
cassava20298.m1 Manihot esculenta cassava20298.m1 I 0.689
29780.m001368 Ricinus communis 29780.m001368 I 0.689
SapurV1A.0203s0150 Salix purpurea SapurV1A.0203s0150 I 0.689
VIT_01s0137g00050 Vitis vinifera VIT_01s0137g00050 I 0.689
TCM_011166 Theobroma cacao TCM_011166 I 0.689
GSMUA_Achr2G11010_001 Musa acuminata GSMUA_Achr2G11010_001 I 0.689
GSMUA_Achr11G01510_001 Musa acuminata GSMUA_Achr11G01510_001 I 0.689
PGSC0003DMG400030032 Solanum tuberosum PGSC0003DMG400030032 I 0.687
Pm002861 Prunus mume Pm002861 I 0.685
MDP0000133017 Malus domestica MDP0000133017 I 0.685
cassava21230.m1 Manihot esculenta cassava21230.m1 I 0.685
POPTR_0004s05660 Populus trichocarpa POPTR_0004s05660 I 0.685
Eucgr.A01921 Eucalyptus grandis Eucgr.A01921 I 0.685
Pm013978 Prunus mume Pm013978 I 0.685
Gorai.011G039000 Gossypium raimondii Gorai.011G039000 I 0.685
orange1.1g035517m.g Citrus sinensis orange1.1g035517m.g I 0.685
Cucsa.047000 Cucumis sativus Cucsa.047000 I 0.685
gene13487-v1.0-hybrid Fragaria vesca gene13487-v1.0-hybrid I 0.685
Ciclev10017867m.g Citrus clementina Ciclev10017867m.g I 0.685
Eucgr.J01904 Eucalyptus grandis Eucgr.J01904 I 0.685
TCM_029684 Theobroma cacao TCM_029684 I 0.685
gene15767-v1.0-hybrid Fragaria vesca gene15767-v1.0-hybrid I 0.685
gene21014-v1.0-hybrid Fragaria vesca gene21014-v1.0-hybrid I 0.685
Cucsa.130050 Cucumis sativus Cucsa.130050 I 0.685
Cucsa.384780 Cucumis sativus Cucsa.384780 I 0.685
Gorai.004G233300 Gossypium raimondii Gorai.004G233300 I 0.685
Gorai.002G265400 Gossypium raimondii Gorai.002G265400 I 0.685
GLYMA18G43550 Glycine max GLYMA18G43550 I 0.685
GSMUA_Achr10G14250_001 Musa acuminata GSMUA_Achr10G14250_001 I 0.685
GLYMA08G12320 Glycine max GLYMA08G12320 I 0.685
SapurV1A.0029s0520 Salix purpurea SapurV1A.0029s0520 I 0.685
Cla013748 Citrullus lanatus Cla013748 I 0.685
GLYMA07G18870 Glycine max GLYMA07G18870 I 0.685
GLYMA05G29161 Glycine max GLYMA05G29161 I 0.685
PK15677.1 Cannabis sativa PK15677.1 I 0.685
GLYMA01G31044 Glycine max GLYMA01G31044 I 0.685
LjSGA_106880.1 Lotus japonicus LjSGA_106880.1 I 0.685
GLYMA12G33911 Glycine max GLYMA12G33911 I 0.685
TCM_021628 Theobroma cacao TCM_021628 I 0.685
Ca_06993 Cicer arietinum Ca_06993 I 0.685
PRUPE_ppa017500mg Prunus persica PRUPE_ppa017500mg I 0.685
Ca_09400 Cicer arietinum Ca_09400 I 0.685
Cla009858 Citrullus lanatus Cla009858 I 0.685
GLYMA13G36616 Glycine max GLYMA13G36616 I 0.685
PRUPE_ppa021179mg Prunus persica PRUPE_ppa021179mg I 0.685
VIT_12s0028g02080 Vitis vinifera VIT_12s0028g02080 I 0.685
MTR_2g084230 Medicago truncatula MTR_2g084230 I 0.683
MDP0000272003 Malus domestica MDP0000272003 I 0.683
Cla018361 Citrullus lanatus Cla018361 I 0.683
GSMUA_Achr4G25920_001 Musa acuminata GSMUA_Achr4G25920_001 I 0.679
MDP0000214282 Malus domestica MDP0000214282 I 0.677
MDP0000196504 Malus domestica MDP0000196504 I 0.677
Lus10001149.g Linum usitatissimum Lus10001149.g I 0.677
evm.TU.supercontig_7.78 Carica papaya evm.TU.supercontig_7.78 I 0.677
VIT_10s0003g01380 Vitis vinifera VIT_10s0003g01380 I 0.677
GLYMA03G06620 Glycine max GLYMA03G06620 I 0.674
PK23854.1 Cannabis sativa PK23854.1 I 0.673
TRIUR3_34985 Triticum urartu TRIUR3_34985 I 0.673
MLOC_49594 Hordeum vulgare MLOC_49594 I 0.673
F775_07349 Aegilops tauschii F775_07349 I 0.673
GSMUA_Achr5G19200_001 Musa acuminata GSMUA_Achr5G19200_001 I 0.671
SapurV1A.0015s0960 Salix purpurea SapurV1A.0015s0960 I 0.671
Gorai.002G169300 Gossypium raimondii Gorai.002G169300 I 0.671
Eucgr.B02627 Eucalyptus grandis Eucgr.B02627 I 0.671
Traes_7BL_C35CABF69 Triticum aestivum Traes_7BL_C35CABF69 I 0.671
cassava27240.m1 Manihot esculenta cassava27240.m1 I 0.671
POPTR_0008s14140 Populus trichocarpa POPTR_0008s14140 I 0.671
POPTR_0010s10990 Populus trichocarpa POPTR_0010s10990 I 0.671
OBART06G17710 Oryza barthii OBART06G17710 I 0.667
Pavir.Da00896 Panicum virgatum Pavir.Da00896 I 0.667
Pavir.Db01175 Panicum virgatum Pavir.Db01175 I 0.667
ORUFI06G18740 Oryza rufipogon ORUFI06G18740 I 0.667
Pavir.Ab01097 Panicum virgatum Pavir.Ab01097 I 0.667
Pavir.Aa02813 Panicum virgatum Pavir.Aa02813 I 0.667
OS06G0543200 Oryza sativa OS06G0543200 I 0.667
Sb04g008670 Sorghum bicolor Sb04g008670 I 0.667
GRMZM2G477238 Zea mays GRMZM2G477238 I 0.667
PGSC0003DMG400026644 Solanum tuberosum PGSC0003DMG400026644 I 0.667
TRIUR3_15779 Triticum urartu TRIUR3_15779 I 0.667
AC219020.4_FG002 Zea mays AC219020.4_FG002 I 0.667
F775_05424 Aegilops tauschii F775_05424 I 0.667
BRADI3G09160 Brachypodium distachyon BRADI3G09160 I 0.667
BGIOSGA021086 Oryza indica BGIOSGA021086 I 0.667
BGIOSGA007863 Oryza indica BGIOSGA007863 I 0.667
TCM_001726 Theobroma cacao TCM_001726 I 0.667
Solyc10g076460.1 Solanum lycopersicum Solyc10g076460.1 I 0.667
Si016955m.g Setaria italica Si016955m.g I 0.667
Solyc06g051060.2 Solanum lycopersicum Solyc06g051060.2 I 0.667
Traes_6BS_44456AE22 Triticum aestivum Traes_6BS_44456AE22 I 0.667
Solyc09g005030.1 Solanum lycopersicum Solyc09g005030.1 I 0.667
Sb10g021360 Sorghum bicolor Sb10g021360 I 0.667
OS02G0241200 Oryza sativa OS02G0241200 I 0.667
OLONG_013527 Oryza longistaminata OLONG_013527 I 0.667
OGLUM06G18870 Oryza glumaepatula OGLUM06G18870 I 0.667
OLONG_024611 Oryza longistaminata OLONG_024611 I 0.667
Aquca_004_00431 Aquilegia coerulea Aquca_004_00431 I 0.667
ONIVA02G11280 Oryza nivara ONIVA02G11280 I 0.667
OB02G19030 Oryza brachyantha OB02G19030 I 0.667
OB06G25370 Oryza brachyantha OB06G25370 I 0.667
Eucgr.E02754 Eucalyptus grandis Eucgr.E02754 I 0.667
OBART02G10190 Oryza barthii OBART02G10190 I 0.667
OGLUM02G02260 Oryza glumaepatula OGLUM02G02260 I 0.667
evm.TU.supercontig_120.33 Carica papaya evm.TU.supercontig_120.33 I 0.667
MLOC_64597 Hordeum vulgare MLOC_64597 I 0.667
ONIVA06G21150 Oryza nivara ONIVA06G21150 I 0.667
ORGLA06G0148100 Oryza glaberrima ORGLA06G0148100 I 0.667
ORGLA02G0091700 Oryza glaberrima ORGLA02G0091700 I 0.667
LPERR06G14620 Leersia perrieri LPERR06G14620 I 0.667
Gorai.012G117800 Gossypium raimondii Gorai.012G117800 I 0.667
LPERR02G08660 Leersia perrieri LPERR02G08660 I 0.667
ORUFI02G10190 Oryza rufipogon ORUFI02G10190 I 0.667
OPUNC06G16010 Oryza punctata OPUNC06G16010 I 0.667
GSMUA_Achr7G13880_001 Musa acuminata GSMUA_Achr7G13880_001 I 0.667
POPTR_0021s00430 Populus trichocarpa POPTR_0021s00430 I 0.666
Lus10040945.g Linum usitatissimum Lus10040945.g I 0.666
gene19641-v1.0-hybrid Fragaria vesca gene19641-v1.0-hybrid I 0.664
Gorai.009G161800 Gossypium raimondii Gorai.009G161800 I 0.664
Eucgr.K02966 Eucalyptus grandis Eucgr.K02966 I 0.663
POPTR_0011s07270 Populus trichocarpa POPTR_0011s07270 I 0.663
Pm010236 Prunus mume Pm010236 I 0.663
fgenesh2_pg.scaffold_82000058 Physcomitrella patens fgenesh2_pg.scaffold_82000058 I 0.661
mgf019744m Mimulus guttatus mgf019744m I 0.661
SELMODRAFT_422768 Selaginella moellendorffii SELMODRAFT_422768 I 0.661
MDP0000234120 Malus domestica MDP0000234120 I 0.661
SELMODRAFT_414222 Selaginella moellendorffii SELMODRAFT_414222 I 0.661