CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SapurV1A.0035s0030
(
Salix purpurea
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
SapurV1A.0035s0030
T289531_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Q2TCH0_PETHY
M11072_2.00
Petunia x hybrida
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PH4_01
0.726
0.806
MYB4
M02303_2.00
Arabidopsis thaliana
YACCWACY
RGTWGGTR
PBM
Weirauch et al.(2014)
pTH7075
0.720
0.796
MYB4
M07115_2.00
Arabidopsis thaliana
NYYACCWAMHWHNDD
HHNDWDKTWGGTRRN
Dap-seq
OMalley et al.(2016)
MYB4_col200_a
0.720
0.796
MYB3
M02288_2.00
Arabidopsis thaliana
NNYACCTACCN
NGGTAGGTRNN
PBM
Weirauch et al.(2014)
pTH7125
0.716
0.785
GRMZM2G005066
M11056_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$C1_Q2
0.695
0.742
MYB111
M00882_2.00
Arabidopsis thaliana
NNNAMCDAMY
RKTHGKTNNN
PBM
Franco-Zorrilla et al.(2014)
MYB111
0.684
0.796
MYB62
M07027_2.00
Arabidopsis thaliana
NHRCCTAAYTWNHNN
NNDNWARTTAGGYDN
Dap-seq
OMalley et al.(2016)
MYB62_col_a
0.663
0.667
MYB62
M07028_2.00
Arabidopsis thaliana
HNKRCCTAACTHH
DDAGTTAGGYMND
Dap-seq
OMalley et al.(2016)
MYB62_colamp_a
0.663
0.667
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
SapurV1A.0035s0030.1.p
Myb
14
61
RGAWTTKEDTLLINYIQAHGEGQWRSLPKKAGLLRCGKSCRLRWMNYL
SapurV1A.0035s0030.1.p
Myb
67
112
RGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNSHL
SapurV1A.0035s0030.2.p
Myb
14
61
RGAWTTKEDTLLINYIQAHGEGQWRSLPKKAGLLRCGKSCRLRWMNYL
SapurV1A.0035s0030.2.p
Myb
67
112
RGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRTDNEIKNYWNSHL
Links
Other
Myb/SANT
family TFs
Other
Salix purpurea
TFs
747 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy