Thhalv10014050m.g (Eutrema salsugineum)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Thhalv10014050m.g T290040_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH

DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.847 0.925
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH

DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.847 0.925
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY

RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.760 0.806
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH

DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.760 0.806
MYB106
M11040_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G01140_01
0.751 0.774
AtMYB93
M07020_2.00
Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH

DDDDDDDDRKTWGKTRRRNHD
Dap-seq
OMalley et al.(2016)
MYB93_col_a
0.733 0.817
AtMYB93
M07021_2.00
Arabidopsis thaliana
NNHNBYYYAMCWAMY

RKTWGKTRRRVNDNN
Dap-seq
OMalley et al.(2016)
MYB93_colamp_a
0.733 0.817
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH

DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.720 0.742
MYB58
M07005_2.00
Arabidopsis thaliana
NNYYYACCWAMCHHH

DDDGKTWGGTRRRNN
Dap-seq
OMalley et al.(2016)
MYB58_col_a
0.696 0.720
MYB58
M07006_2.00
Arabidopsis thaliana
HNNYHYACCWAMCHHHNNNNH

DNNNNDDDGKTWGGTRDRNND
Dap-seq
OMalley et al.(2016)
MYB58_colamp_a
0.696 0.720
AtMYB10
M07081_2.00
Arabidopsis thaliana
YYYACCWAMCHHHHNH

DNDDDDGKTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB10_col_a
0.684 0.720
AtMYB10
M07082_2.00
Arabidopsis thaliana
NYYYACCWAMCHHH

DDDGKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB10_colamp_a
0.684 0.720
MYB49
M07140_2.00
Arabidopsis thaliana
HDBBYYACCWAMYWH

DWRKTWGGTRRVVHD
Dap-seq
OMalley et al.(2016)
MYB49_col_a
0.666 0.774
MYB49
M07141_2.00
Arabidopsis thaliana
NYYYACCTAMYWHN

NDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB49_colamp_a
0.666 0.774
ATMYB13
M06999_2.00
Arabidopsis thaliana
HYCACCWACCHHHNH

DNDDDGGTWGGTGRD
Dap-seq
OMalley et al.(2016)
MYB13_col_a
0.665 0.742
ATMYB13
M07000_2.00
Arabidopsis thaliana
BYCACCWACCHHHNNHNN

NNDNNDDDGGTWGGTGRV
Dap-seq
OMalley et al.(2016)
MYB13_colamp_a
0.665 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10014050m Myb 14 61
Thhalv10014050m Myb 67 112

Links

Other Myb/SANT family TFs
Other Eutrema salsugineum TFs

748 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29700.m000761 Ricinus communis 29700.m000761 I 0.000
BGIOSGA025662 Oryza indica BGIOSGA025662 N 0.000
BRADI1G28400 Brachypodium distachyon BRADI1G28400 N 0.000
Ca_04035 Cicer arietinum Ca_04035 N 0.000
evm.TU.supercontig_18.141 Carica papaya evm.TU.supercontig_18.141 N 0.000
F775_29935 Aegilops tauschii F775_29935 N 0.000
GLYMA04G40880 Glycine max GLYMA04G40880 N 0.000
GLYMA06G13960 Glycine max GLYMA06G13960 N 0.000
GRF11 Oryza sativa OS07G0467500 N 0.000
GRMZM2G004619 Zea mays GRMZM2G004619 N 0.000
GRMZM2G067743 Zea mays GRMZM2G067743 I 0.000
GRMZM2G096709 Zea mays GRMZM2G096709 N 0.000
GRMZM2G119359 Zea mays GRMZM2G119359 I 0.000
GRMZM5G893117 Zea mays GRMZM5G893117 I 0.000
GSMUA_Achr8G12060_001 Musa acuminata GSMUA_Achr8G12060_001 N 0.000
LPERR07G11440 Leersia perrieri LPERR07G11440 N 0.000
MLOC_70581 Hordeum vulgare MLOC_70581 N 0.000
OB07G19720 Oryza brachyantha OB07G19720 N 0.000
OBART07G13680 Oryza barthii OBART07G13680 N 0.000
OGLUM07G12780 Oryza glumaepatula OGLUM07G12780 N 0.000
OLONG_025015 Oryza longistaminata OLONG_025015 N 0.000
OMERI07G10850 Oryza meridionalis OMERI07G10850 N 0.000
OMERI08G17030 Oryza meridionalis OMERI08G17030 N 0.000
ONIVA07G11690 Oryza nivara ONIVA07G11690 N 0.000
OPUNC07G12320 Oryza punctata OPUNC07G12320 N 0.000
ORGLA07G0115500 Oryza glaberrima ORGLA07G0115500 N 0.000
ORUFI07G13880 Oryza rufipogon ORUFI07G13880 N 0.000
Pavir.Aa00919 Panicum virgatum Pavir.Aa00919 I 0.000
Pavir.Ba01449 Panicum virgatum Pavir.Ba01449 N 0.000
Pavir.Bb02610 Panicum virgatum Pavir.Bb02610 N 0.000
Pavir.Db02048 Panicum virgatum Pavir.Db02048 I 0.000
POPTR_0012s02950 Populus trichocarpa POPTR_0012s02950 N 0.000
POPTR_0015s00860 Populus trichocarpa POPTR_0015s00860 N 0.000
SapurV1A.0326s0130 Salix purpurea SapurV1A.0326s0130 I 0.000
SapurV1A.0755s0030 Salix purpurea SapurV1A.0755s0030 N 0.000
Sb02g032860 Sorghum bicolor Sb02g032860 N 0.000
Si030809m.g Setaria italica Si030809m.g N 0.000
TCM_015497 Theobroma cacao TCM_015497 N 0.000
Traes_2AS_CA4D79100 Triticum aestivum Traes_2AS_CA4D79100 N 0.000
Traes_2BS_E3CBE0B73 Triticum aestivum Traes_2BS_E3CBE0B73 N 0.000
Traes_2DL_243DA9D84 Triticum aestivum Traes_2DL_243DA9D84 N 0.000
Traes_6BL_7462E6F9B Triticum aestivum Traes_6BL_7462E6F9B I 0.000
TRIUR3_26160 Triticum urartu TRIUR3_26160 N 0.000