CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Thhalv10027463m.g
(
Eutrema salsugineum
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
Thhalv10027463m.g
T290160_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AtMYB41
M07109_2.00
Arabidopsis thaliana
DHDBBYYACCTAMYW
WRKTAGGTRRVVHDH
Dap-seq
OMalley et al.(2016)
MYB41_col_a
0.886
0.968
AtMYB74
M07104_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB74_colamp_a
0.802
0.935
AtMYB74
M07105_2.00
Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV
Dap-seq
OMalley et al.(2016)
MYB74_col
0.802
0.935
PK28187.1
M01286_2.00
Cannabis sativa
TACCTACC
GGTAGGTA
PBM
Lambert et al.(2019)
pTH11305
0.799
0.914
MYB49
M07140_2.00
Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD
Dap-seq
OMalley et al.(2016)
MYB49_col_a
0.736
0.817
MYB49
M07141_2.00
Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB49_colamp_a
0.736
0.817
MYB39
M07106_2.00
Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_col_a
0.696
0.720
MYB39
M07107_2.00
Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN
Dap-seq
OMalley et al.(2016)
MYB39_colamp_a
0.696
0.720
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.687
0.742
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.687
0.742
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH
DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.664
0.796
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH
DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.664
0.796
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Thhalv10027463m
Myb
14
61
KGPWTPEEDQKLIDYIRFHGPGNWRILPKNAGLQRCGKSCRLRWTNYL
Thhalv10027463m
Myb
67
112
RGRFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNHWNTHI
Links
Other
Myb/SANT
family TFs
Other
Eutrema salsugineum
TFs
429 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy