PK23829.1 (Cannabis sativa)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 PK23829.1 T290469_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK23829.1
M02355_2.00
Cannabis sativa
VTTATCCD

HGGATAAB
PBM
Weirauch et al.(2014)
pTH9592
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK17526.1
M02353_2.00
Cannabis sativa
NNTTATCCAN

NTGGATAANN
PBM
Weirauch et al.(2014)
pTH9588
0.898 0.957
AT3G16350
M01078_2.00
Arabidopsis thaliana
NYTATCYDNN

NNHRGATARN
PBM
Sullivan et al.(2014)
pTH7149
0.881 0.915
fgenesh1_pg.scaffold_70000111
M02342_2.00
Physcomitrella patens
NNHNATCBN

NVGATNDNN
PBM
Weirauch et al.(2014)
pTH8492
0.880 0.936
PK29550.1
M02358_2.00
Cannabis sativa
NNHDATCYNN

NNRGATHDNN
PBM
Weirauch et al.(2014)
pTH9595
0.871 0.894
AT1G19000
M02287_2.00
Arabidopsis thaliana
NYTATCYDNN

NNHRGATARN
PBM
Weirauch et al.(2014)
pTH7120
0.847 0.915
AT1G19000
M07012_2.00
Arabidopsis thaliana
HDYHTTATCCAHWW

WWDTGGATAADRHD
Dap-seq
OMalley et al.(2016)
At1g19000_col_a
0.847 0.915
AT1G19000
M07013_2.00
Arabidopsis thaliana
WDYNTTATCCAHWW

WWDTGGATAANRHW
Dap-seq
OMalley et al.(2016)
At1g19000_colamp_a
0.847 0.915
PK00738.1
M02346_2.00
Cannabis sativa
NYWATCYDNN

NNHRGATWRN
PBM
Weirauch et al.(2014)
pTH9487
0.822 0.894
KUA1
M02312_2.00
Arabidopsis thaliana
NNTTATCCDN

NHGGATAANN
PBM
Weirauch et al.(2014)
pTH7647
0.821 0.872
KUA1
M07136_2.00
Arabidopsis thaliana
WWHHTTATCCAHWW

WWDTGGATAADDWW
Dap-seq
OMalley et al.(2016)
At5g47390_colamp_a
0.821 0.872
KUA1
M07137_2.00
Arabidopsis thaliana
HHWDYHTTATCCAHW

WDTGGATAADRHWDD
Dap-seq
OMalley et al.(2016)
At5g47390_col_b
0.821 0.872
0600010132
M02360_2.00
Ostreococcus tauri
NNVTTATCCDNNN

NNNHGGATAABNN
PBM
Weirauch et al.(2014)
pTH9441
0.800 0.872
AT5G61620
M07149_2.00
Arabidopsis thaliana
WWHHTTATCCAHWWN

NWWDTGGATAADDWW
Dap-seq
OMalley et al.(2016)
AT5G61620_col_a
0.794 0.787
AT5G61620
M07150_2.00
Arabidopsis thaliana
YHTTATCCAHW

WDTGGATAADR
Dap-seq
OMalley et al.(2016)
AT5G61620_colamp_a
0.794 0.787
AT1G74840
M02291_2.00
Arabidopsis thaliana
NGWTATCCRNN

NNYGGATAWCN
PBM
Weirauch et al.(2014)
pTH7074
0.777 0.915
AT1G74840
M07037_2.00
Arabidopsis thaliana
HHTTATCCAHW

WDTGGATAADD
Dap-seq
OMalley et al.(2016)
At1g74840_col100_a
0.777 0.915
AT1G74840
M07038_2.00
Arabidopsis thaliana
HWNHTTATCCAHWW

WWDTGGATAADNWD
Dap-seq
OMalley et al.(2016)
At1g74840_colamp_a
0.777 0.915
AT5G56840
M07144_2.00
Arabidopsis thaliana
WWYMTTATCCAWWWN

NWWWTGGATAAKRWW
Dap-seq
OMalley et al.(2016)
AT5G56840_col_a
0.770 0.809
AT5G56840
M07145_2.00
Arabidopsis thaliana
HHHWWYHTTATCCWHW

WDWGGATAADRWWDDD
Dap-seq
OMalley et al.(2016)
AT5G56840_colamp_a
0.770 0.809
AT3G10580
M07072_2.00
Arabidopsis thaliana
AWBCTTATCYWHWHH

DDWDWRGATAAGVWT
Dap-seq
OMalley et al.(2016)
AT3G10580_col_a
0.751 0.702
AT3G10580
M07073_2.00
Arabidopsis thaliana
CCGAWAAWNTCGGDD

HHCCGANWTTWTCGG
Dap-seq
OMalley et al.(2016)
AT3G10580_colamp_a
0.751 0.702
For this family, TFs with SR scores > 0.661 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02355_2.00 Myb 51 98

DNA Binding Domains

Protein ID Domain From To Sequence
PK23829.1 Myb 141 188

Links

Other Myb/SANT family TFs
Other Cannabis sativa TFs

599 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_04528 Aegilops tauschii F775_04528 I 0.000
AMTR_s00041p00044170 Amborella trichopoda AMTR_s00041p00044170 I 0.000
Aquca_013_00578 Aquilegia coerulea Aquca_013_00578 I 0.000
Aquca_013_00580 Aquilegia coerulea Aquca_013_00580 I 0.000
Aquca_009_00560 Aquilegia coerulea Aquca_009_00560 I 0.000
LBD18 Arabidopsis lyrata fgenesh2_kg.4__2737__AT2G45420.1 I 0.000
LBD20 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3000301 I 0.000
LBD30 Arabidopsis lyrata fgenesh2_kg.6__3680__AT4G00220.1 I 0.000
LBD20 Arabidopsis thaliana AT3G03760 I 0.000
LBD18 Arabidopsis thaliana AT2G45420 D 0.000
LBD30 Arabidopsis thaliana AT4G00220 D 0.000
LBD19 Arabidopsis thaliana AT2G45410 D 0.000
Bostr.25993s0233 Boechera stricta Bostr.25993s0233 I 0.000
Bostr.19046s0098 Boechera stricta Bostr.19046s0098 I 0.000
Bostr.14547s0031 Boechera stricta Bostr.14547s0031 I 0.000
BRADI3G22510 Brachypodium distachyon BRADI3G22510 I 0.000
BRADI1G68170 Brachypodium distachyon BRADI1G68170 I 0.000
Bo1g153580 Brassica oleracea Bo1g153580 I 0.000
Bo4g024620 Brassica oleracea Bo4g024620 I 0.000
Bo2g097560 Brassica oleracea Bo2g097560 I 0.000
Bo4g195520 Brassica oleracea Bo4g195520 I 0.000
Bo9g002160 Brassica oleracea Bo9g002160 I 0.000
Bra040311 Brassica rapa Bra040311 I 0.000
Bra037323 Brassica rapa Bra037323 I 0.000
Bra036436 Brassica rapa Bra036436 I 0.000
Bra004910 Brassica rapa Bra004910 I 0.000
Bra008514 Brassica rapa Bra008514 I 0.000
PK25573.1 Cannabis sativa PK25573.1 I 0.000
Cagra.2098s0013 Capsella grandiflora Cagra.2098s0013 I 0.000
Cagra.1261s0014 Capsella grandiflora Cagra.1261s0014 I 0.000
Cagra.0698s0021 Capsella grandiflora Cagra.0698s0021 I 0.000
Carubv10001875m.g Capsella rubella Carubv10001875m.g I 0.000
Carubv10015417m.g Capsella rubella Carubv10015417m.g I 0.000
Carubv10025050m.g Capsella rubella Carubv10025050m.g I 0.000
evm.TU.supercontig_18.118 Carica papaya evm.TU.supercontig_18.118 I 0.000
evm.TU.supercontig_18.117 Carica papaya evm.TU.supercontig_18.117 I 0.000
Ca_19598 Cicer arietinum Ca_19598 I 0.000
Ca_19597 Cicer arietinum Ca_19597 I 0.000
Cla007068 Citrullus lanatus Cla007068 I 0.000
Cla006088 Citrullus lanatus Cla006088 I 0.000
Cla021625 Citrullus lanatus Cla021625 I 0.000
Cla007069 Citrullus lanatus Cla007069 I 0.000
Ciclev10021843m.g Citrus clementina Ciclev10021843m.g I 0.000
Ciclev10021992m.g Citrus clementina Ciclev10021992m.g I 0.000
orange1.1g036534m.g Citrus sinensis orange1.1g036534m.g I 0.000
orange1.1g042813m.g Citrus sinensis orange1.1g042813m.g I 0.000
Cucsa.362840 Cucumis sativus Cucsa.362840 I 0.000
Cucsa.257700 Cucumis sativus Cucsa.257700 I 0.000
Cucsa.053440 Cucumis sativus Cucsa.053440 I 0.000
Cucsa.362830 Cucumis sativus Cucsa.362830 I 0.000
Eucgr.E01414 Eucalyptus grandis Eucgr.E01414 I 0.000
Eucgr.K01522 Eucalyptus grandis Eucgr.K01522 I 0.000
Thhalv10028937m.g Eutrema salsugineum Thhalv10028937m.g I 0.000
Thhalv10021301m.g Eutrema salsugineum Thhalv10021301m.g I 0.000
Thhalv10001791m.g Eutrema salsugineum Thhalv10001791m.g I 0.000
gene19356-v1.0-hybrid Fragaria vesca gene19356-v1.0-hybrid I 0.000
gene19355-v1.0-hybrid Fragaria vesca gene19355-v1.0-hybrid I 0.000
GLYMA18G45320 Glycine max GLYMA18G45320 I 0.000
GLYMA01G34523 Glycine max GLYMA01G34523 I 0.000
GLYMA01G34540 Glycine max GLYMA01G34540 I 0.000
GLYMA03G02620 Glycine max GLYMA03G02620 I 0.000
GLYMA03G02631 Glycine max GLYMA03G02631 I 0.000
GLYMA09G40500 Glycine max GLYMA09G40500 I 0.000
Gorai.007G091600 Gossypium raimondii Gorai.007G091600 I 0.000
Gorai.008G114400 Gossypium raimondii Gorai.008G114400 I 0.000
Gorai.004G161100 Gossypium raimondii Gorai.004G161100 I 0.000
Gorai.007G144400 Gossypium raimondii Gorai.007G144400 I 0.000
MLOC_55239 Hordeum vulgare MLOC_55239 I 0.000
LPERR03G09330 Leersia perrieri LPERR03G09330 I 0.000
Lus10009298.g Linum usitatissimum Lus10009298.g I 0.000
chr1.CM1255.40.nc Lotus japonicus chr1.CM1255.40.nc I 0.000
chr3.LjT44N20.90.nd Lotus japonicus chr3.LjT44N20.90.nd I 0.000
LjSGA_002536.2 Lotus japonicus LjSGA_002536.2 I 0.000
LjT35F15.70.nd Lotus japonicus LjT35F15.70.nd I 0.000
MDP0000429067 Malus domestica MDP0000429067 I 0.000
MDP0000254224 Malus domestica MDP0000254224 I 0.000
cassava28672.m1 Manihot esculenta cassava28672.m1 I 0.000
cassava28659.m1 Manihot esculenta cassava28659.m1 I 0.000
cassava40137.m1 Manihot esculenta cassava40137.m1 I 0.000
cassava36912.valid.m1 Manihot esculenta cassava36912.valid.m1 I 0.000
MTR_8g036085 Medicago truncatula MTR_8g036085 I 0.000
MTR_8g036105 Medicago truncatula MTR_8g036105 I 0.000
MTR_7g074990 Medicago truncatula MTR_7g074990 I 0.000
MTR_7g075230 Medicago truncatula MTR_7g075230 I 0.000
mgf020735m Mimulus guttatus mgf020735m I 0.000
mgf026090m Mimulus guttatus mgf026090m I 0.000
GSMUA_AchrUn_randomG10470_001 Musa acuminata GSMUA_AchrUn_randomG10470_001 I 0.000
GSMUA_Achr5G11330_001 Musa acuminata GSMUA_Achr5G11330_001 I 0.000
GSMUA_Achr4G28810_001 Musa acuminata GSMUA_Achr4G28810_001 I 0.000
GSMUA_Achr4G25190_001 Musa acuminata GSMUA_Achr4G25190_001 I 0.000
GSMUA_Achr2G11240_001 Musa acuminata GSMUA_Achr2G11240_001 I 0.000
GSMUA_Achr1G02520_001 Musa acuminata GSMUA_Achr1G02520_001 I 0.000
GSMUA_Achr8G14330_001 Musa acuminata GSMUA_Achr8G14330_001 I 0.000
OBART03G10450 Oryza barthii OBART03G10450 I 0.000
OBART02G37570 Oryza barthii OBART02G37570 I 0.000
OB10G12360 Oryza brachyantha OB10G12360 I 0.000
OB03G20590 Oryza brachyantha OB03G20590 I 0.000
ORGLA10G0025200 Oryza glaberrima ORGLA10G0025200 I 0.000
ORGLA03G0100400 Oryza glaberrima ORGLA03G0100400 I 0.000
OGLUM10G03230 Oryza glumaepatula OGLUM10G03230 I 0.000
OGLUM03G10340 Oryza glumaepatula OGLUM03G10340 I 0.000
BGIOSGA032254 Oryza indica BGIOSGA032254 I 0.000
BGIOSGA011118 Oryza indica BGIOSGA011118 I 0.000
OLONG_028429 Oryza longistaminata OLONG_028429 I 0.000
OLONG_001985 Oryza longistaminata OLONG_001985 I 0.000
OMERI03G09680 Oryza meridionalis OMERI03G09680 I 0.000
ONIVA10G03250 Oryza nivara ONIVA10G03250 I 0.000
OPUNC10G02630 Oryza punctata OPUNC10G02630 I 0.000
OPUNC03G10080 Oryza punctata OPUNC03G10080 I 0.000
ORUFI03G10670 Oryza rufipogon ORUFI03G10670 I 0.000
ORUFI10G03180 Oryza rufipogon ORUFI10G03180 I 0.000
OS10G0162600 Oryza sativa OS10G0162600 I 0.000
OS03G0246900 Oryza sativa OS03G0246900 I 0.000
Pavir.Ia02614 Panicum virgatum Pavir.Ia02614 I 0.000
Pavir.Ia03917 Panicum virgatum Pavir.Ia03917 I 0.000
Pavir.Ib02517 Panicum virgatum Pavir.Ib02517 I 0.000
Pavir.J03376 Panicum virgatum Pavir.J03376 I 0.000
Pavir.J34872 Panicum virgatum Pavir.J34872 I 0.000
gw1.190.59.1 Physcomitrella patens gw1.190.59.1 I 0.000
gw1.61.81.1 Physcomitrella patens gw1.61.81.1 I 0.000
gw1.42.84.1 Physcomitrella patens gw1.42.84.1 I 0.000
gw1.35.169.1 Physcomitrella patens gw1.35.169.1 I 0.000
gw1.261.12.1 Physcomitrella patens gw1.261.12.1 I 0.000
gw1.157.74.1 Physcomitrella patens gw1.157.74.1 I 0.000
POPTR_0002s14990 Populus trichocarpa POPTR_0002s14990 I 0.000
POPTR_0047s00280 Populus trichocarpa POPTR_0047s00280 I 0.000
POPTR_0014s06590 Populus trichocarpa POPTR_0014s06590 I 0.000
POPTR_0014s06580 Populus trichocarpa POPTR_0014s06580 I 0.000
Pm017936 Prunus mume Pm017936 I 0.000
Pm017935 Prunus mume Pm017935 I 0.000
Pm028642 Prunus mume Pm028642 I 0.000
PRUPE_ppa024802mg Prunus persica PRUPE_ppa024802mg I 0.000
PRUPE_ppa017589mg Prunus persica PRUPE_ppa017589mg I 0.000
PRUPE_ppa010383mg Prunus persica PRUPE_ppa010383mg I 0.000
30174.m008897 Ricinus communis 30174.m008897 I 0.000
30174.m008898 Ricinus communis 30174.m008898 I 0.000
SapurV1A.0532s0190 Salix purpurea SapurV1A.0532s0190 I 0.000
SapurV1A.0532s0200 Salix purpurea SapurV1A.0532s0200 I 0.000
SapurV1A.0024s0780 Salix purpurea SapurV1A.0024s0780 I 0.000
SapurV1A.0024s0790 Salix purpurea SapurV1A.0024s0790 I 0.000
SELMODRAFT_49270 Selaginella moellendorffii SELMODRAFT_49270 I 0.000
SELMODRAFT_59642 Selaginella moellendorffii SELMODRAFT_59642 I 0.000
Si019578m.g Setaria italica Si019578m.g I 0.000
Si015156m.g Setaria italica Si015156m.g I 0.000
Solyc01g091420.1 Solanum lycopersicum Solyc01g091420.1 I 0.000
PGSC0003DMG400012757 Solanum tuberosum PGSC0003DMG400012757 I 0.000
PGSC0003DMG402012772 Solanum tuberosum PGSC0003DMG402012772 I 0.000
Sb01g041130 Sorghum bicolor Sb01g041130 I 0.000
Sb01g024400 Sorghum bicolor Sb01g024400 I 0.000
TCM_005496 Theobroma cacao TCM_005496 I 0.000
Traes_4DL_A2012EA68 Triticum aestivum Traes_4DL_A2012EA68 I 0.000
Traes_4BL_3FB579782 Triticum aestivum Traes_4BL_3FB579782 I 0.000
Traes_4AS_5971FF832 Triticum aestivum Traes_4AS_5971FF832 I 0.000
LBD30 Vitis vinifera VIT_15s0048g00830 I 0.000
LBD20 Vitis vinifera VIT_08s0056g01650 I 0.000
VIT_15s0048g00840 Vitis vinifera VIT_15s0048g00840 I 0.000
GRMZM2G150594 Zea mays GRMZM2G150594 I 0.000
GRMZM2G110913 Zea mays GRMZM2G110913 I 0.000
GRMZM2G076327 Zea mays GRMZM2G076327 I 0.000