chr1.CM0591.530.nd (Lotus japonicus)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 chr1.CM0591.530.nd T290662_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AtMYB17
M07099_2.00
Arabidopsis thaliana
YYYACCWACCWHHHH

DDDDWGGTWGGTRRR
Dap-seq
OMalley et al.(2016)
MYB17_colamp_a
0.756 0.763
AtMYB93
M07020_2.00
Arabidopsis thaliana
HDNYYYAMCWAMYHHHHHHHH

DDDDDDDDRKTWGKTRRRNHD
Dap-seq
OMalley et al.(2016)
MYB93_col_a
0.725 0.796
AtMYB93
M07021_2.00
Arabidopsis thaliana
NNHNBYYYAMCWAMY

RKTWGKTRRRVNDNN
Dap-seq
OMalley et al.(2016)
MYB93_colamp_a
0.725 0.796
MYB92
M07123_2.00
Arabidopsis thaliana
NHHACCTAMY

RKTAGGTDDN
Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b
0.724 0.785
MYB92
M07124_2.00
Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH

DDRKTWGGTRRRNNWNNNN
Dap-seq
OMalley et al.(2016)
MYB92_colamp_a
0.724 0.785
MYB107
M07061_2.00
Arabidopsis thaliana
NDDWDBBYYACCWAMYHH

DDRKTWGGTRRVVHWHHN
Dap-seq
OMalley et al.(2016)
MYB107_col_a
0.711 0.774
MYB107
M07062_2.00
Arabidopsis thaliana
WNBYYYACCWAMYH

DRKTWGGTRRRVNW
Dap-seq
OMalley et al.(2016)
MYB107_colamp_a
0.711 0.774
MYB106
M11040_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT3G01140_01
0.709 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0591.530.nd Myb 14 61
chr1.CM0591.530.nd Myb 67 112

Links

Other Myb/SANT family TFs
Other Lotus japonicus TFs

531 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ALUE_0002184101 Ascaris lumbricoides ALUE_0002184101 I 0.000
ANCCEY_10600 Ancylostoma ceylanicum ANCCEY_10600 I 0.000
ANCDUO_22610 Ancylostoma duodenale ANCDUO_22610 I 0.000
ASIM_0001651901 Anisakis simplex ASIM_0001651901 I 0.000
ASU_08993 Ascaris suum ASU_08993 I 0.000
Bm3595 Brugia malayi Bm3595 I 0.000
CBG03458 Caenorhabditis briggsae CBG03458 I 0.000
CBN11928 Caenorhabditis brenneri CBN11928 I 0.000
CBN28223 Caenorhabditis brenneri CBN28223 I 0.000
CGOC_0000021801 Cylicostephanus goldi CGOC_0000021801 I 0.000
CRE01489 Caenorhabditis remanei CRE01489 I 0.000
CRE29878 Caenorhabditis remanei CRE29878 I 0.000
DME_0000322601 Dracunculus medinensis DME_0000322601 I 0.000
EVEC_0000803501 Enterobius vermicularis EVEC_0000803501 I 0.000
GPLIN_000014500 Globodera pallida GPLIN_000014500 I 0.000
Hba_14997 Heterorhabditis bacteriophora Hba_14997 I 0.000
L596_g13737 Steinernema carpocapsae L596_g13737 I 0.000
L889_g10141 Steinernema feltiae L889_g10141 I 0.000
L892_g25347 Steinernema scapterisci L892_g25347 I 0.000
L893_g7390 Steinernema glaseri L893_g7390 I 0.000
L898_g15300 Steinernema monticolum L898_g15300 I 0.000
LOAG_01923 Loa loa LOAG_01923 I 0.000
nAv.1.0.1.g03085 Acanthocheilonema viteae nAv.1.0.1.g03085 I 0.000
nDi.2.2.2.g02831 Dirofilaria immitis nDi.2.2.2.g02831 I 0.000
NECAME_07822 Necator americanus NECAME_07822 I 0.000
nLs.2.1.2.g03792 Litomosoides sigmodontis nLs.2.1.2.g03792 I 0.000
nOo.2.0.1.g00032 Onchocerca ochengi nOo.2.0.1.g00032 I 0.000
OESDEN_02515 Oesophagostomum dentatum OESDEN_02515 I 0.000
PEQ_0001129601 Parascaris equorum PEQ_0001129601 I 0.000
PTRK_0000487800 Parastrongyloides trichosuri PTRK_0000487800 I 0.000
RSKR_0000579600 Rhabditophanes kr3021 RSKR_0000579600 I 0.000
scaffold140-EXSNAP2012.77 Pristionchus exspectatus scaffold140-EXSNAP2012.77 I 0.000
SMUV_0001051801 Syphacia muris SMUV_0001051801 I 0.000
SPAL_0001677600 Strongyloides papillosus SPAL_0001677600 I 0.000
SSTP_0001230300 Strongyloides stercoralis SSTP_0001230300 I 0.000
SVE_1688100 Strongyloides venezuelensis SVE_1688100 I 0.000
bed-3 Caenorhabditis elegans WBGene00009133 D 0.000
WBGene00241796 Onchocerca volvulus WBGene00241796 I 0.000
WUBG_08027 Wuchereria bancrofti WUBG_08027 I 0.000