PDK_20s1844641g001 (Phoenix dactylifera)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 PDK_20s1844641g001 T291207_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYB46
M00877_2.00
Arabidopsis thaliana
NAMCNDHHN

NDDHNGKTN
PBM
Franco-Zorrilla et al.(2014)
MYB46
0.838 0.914
MYB46
M11046_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ATMYB46_Q6
0.838 0.914
MYB83
M01073_2.00
Arabidopsis thaliana
YACCHACC

GGTDGGTR
PBM
Sullivan et al.(2014)
pTH7140
0.798 0.871
MYB83
M07066_2.00
Arabidopsis thaliana
YCACCAACHNH

DNDGTTGGTGR
Dap-seq
OMalley et al.(2016)
MYB83_col_a
0.798 0.871
MYB83
M07067_2.00
Arabidopsis thaliana
NCACCWAMCDNHNNN

NNNDNHGKTWGGTGN
Dap-seq
OMalley et al.(2016)
MYB83_colamp_a
0.798 0.871
MYB55
M00876_2.00
Arabidopsis thaliana
ACCWAMCD

HGKTWGGT
PBM
Franco-Zorrilla et al.(2014)
MYB55
0.688 0.753
MYB55
M07102_2.00
Arabidopsis thaliana
HNNNHBYAMCWAMCD

HGKTWGKTRVDNNND
Dap-seq
OMalley et al.(2016)
MYB55_colamp_a
0.688 0.753
MYB55
M07103_2.00
Arabidopsis thaliana
NYNYAMCHACCRHH

DDYGGTDGKTRNRN
Dap-seq
OMalley et al.(2016)
MYB55_col
0.688 0.753
MYB61
M07002_2.00
Arabidopsis thaliana
HNYAMCHACCDNHNH

DNDNHGGTDGKTRND
Dap-seq
OMalley et al.(2016)
MYB61_col_a
0.686 0.742
MYB61
M07003_2.00
Arabidopsis thaliana
NHNYACCWAMCDH

DHGKTWGGTRNDN
Dap-seq
OMalley et al.(2016)
MYB61_colamp_a
0.686 0.742
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1844641g001 Myb 25 72
PDK_20s1844641g001 Myb 78 123

Links

Other Myb/SANT family TFs
Other Phoenix dactylifera TFs

477 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
S1FA3 Arabidopsis thaliana AT3G09735 D 0.000
PGSC0003DMG400001772 Solanum tuberosum PGSC0003DMG400001772 I 0.000
Cla018556 Citrullus lanatus Cla018556 I 0.000
29805.m001471 Ricinus communis 29805.m001471 I 0.000
cassava45931.m1 Manihot esculenta cassava45931.m1 I 0.000
Cucsa.124240 Cucumis sativus Cucsa.124240 I 0.000
Cucsa.307040 Cucumis sativus Cucsa.307040 I 0.000
mgf000337m Mimulus guttatus mgf000337m I 0.000
mgf004062m Mimulus guttatus mgf004062m I 0.000
Aquca_027_00077 Aquilegia coerulea Aquca_027_00077 I 0.000
Bostr.11793s0058 Boechera stricta Bostr.11793s0058 I 0.000
Cla018106 Citrullus lanatus Cla018106 I 0.000
Ca_12028 Cicer arietinum Ca_12028 I 0.000
PGSC0003DMG400020934 Solanum tuberosum PGSC0003DMG400020934 I 0.000
PGSC0003DMG401017590 Solanum tuberosum PGSC0003DMG401017590 I 0.000
POPTR_0006s13230 Populus trichocarpa POPTR_0006s13230 I 0.000
POPTR_0016s08890 Populus trichocarpa POPTR_0016s08890 I 0.000
scaffold_402348.1 Arabidopsis lyrata scaffold_402348.1 I 0.000
Solyc09g007500.2 Solanum lycopersicum Solyc09g007500.2 I 0.000
TCM_022113 Theobroma cacao TCM_022113 I 0.000
VIT_06s0004g03160 Vitis vinifera VIT_06s0004g03160 I 0.000
Ca_12027 Cicer arietinum Ca_12027 I 0.000
Bostr.22252s0094 Boechera stricta Bostr.22252s0094 I 0.000
Bostr.23794s0377 Boechera stricta Bostr.23794s0377 I 0.000
Cagra.0612s0062 Capsella grandiflora Cagra.0612s0062 I 0.000
Lus10015073.g Linum usitatissimum Lus10015073.g I 0.000
Lus10023177.g Linum usitatissimum Lus10023177.g I 0.000
orange1.1g044991m.g Citrus sinensis orange1.1g044991m.g I 0.000
SapurV1A.0112s0080 Salix purpurea SapurV1A.0112s0080 I 0.000
SapurV1A.0209s0130 Salix purpurea SapurV1A.0209s0130 I 0.000
Thhalv10010878m.g Eutrema salsugineum Thhalv10010878m.g I 0.000
Thhalv10017496m.g Eutrema salsugineum Thhalv10017496m.g I 0.000
Thhalv10021874m.g Eutrema salsugineum Thhalv10021874m.g I 0.000
PK08477.1 Cannabis sativa PK08477.1 I 0.000
Gorai.009G419300 Gossypium raimondii Gorai.009G419300 I 0.000
Gorai.006G168100 Gossypium raimondii Gorai.006G168100 I 0.000
Cagra.0666s0032 Capsella grandiflora Cagra.0666s0032 I 0.000
Cagra.2515s0064 Capsella grandiflora Cagra.2515s0064 I 0.000
Carubv10015035m.g Capsella rubella Carubv10015035m.g I 0.000
Carubv10018341m.g Capsella rubella Carubv10018341m.g I 0.000
Carubv10025429m.g Capsella rubella Carubv10025429m.g I 0.000
Ciclev10013218m.g Citrus clementina Ciclev10013218m.g I 0.000
Eucgr.A01168 Eucalyptus grandis Eucgr.A01168 I 0.000
evm.TU.supercontig_638.2 Carica papaya evm.TU.supercontig_638.2 I 0.000
Gorai.002G249300 Gossypium raimondii Gorai.002G249300 I 0.000
chr1.CM0033.550.nc Lotus japonicus chr1.CM0033.550.nc I 0.000
GLYMA19G36350 Glycine max GLYMA19G36350 I 0.000
Bra006994 Brassica rapa Bra006994 I 0.000
Bra029784 Brassica rapa Bra029784 I 0.000
OB04G18780 Oryza brachyantha OB04G18780 I 0.000
Bra034084 Brassica rapa Bra034084 I 0.000
OB04G18770 Oryza brachyantha OB04G18770 I 0.000
MTR_7g100905 Medicago truncatula MTR_7g100905 I 0.000
MTR_7g100890 Medicago truncatula MTR_7g100890 I 0.000
MTR_7g100880 Medicago truncatula MTR_7g100880 I 0.000
Bra039779 Brassica rapa Bra039779 I 0.000
LPERR04G08410 Leersia perrieri LPERR04G08410 I 0.000
fgenesh1_pm.C_scaffold_5001425 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001425 I 0.000
GLYMA03G33640 Glycine max GLYMA03G33640 I 0.000
GSMUA_Achr10G13120_001 Musa acuminata GSMUA_Achr10G13120_001 I 0.000
GLYMA10G05790 Glycine max GLYMA10G05790 I 0.000
GLYMA13G20160 Glycine max GLYMA13G20160 I 0.000
AMTR_s00052p00202630 Amborella trichopoda AMTR_s00052p00202630 I 0.000
Bra003132 Brassica rapa Bra003132 I 0.000
Bo6g067310 Brassica oleracea Bo6g067310 I 0.000
Bo00703s130 Brassica oleracea Bo00703s130 I 0.000
fgenesh2_kg.3__997__AT3G09735.1 Arabidopsis lyrata fgenesh2_kg.3__997__AT3G09735.1 I 0.000
S1FA1 Arabidopsis thaliana AT3G53370 I 0.000
VIT_08s0040g02220 Vitis vinifera VIT_08s0040g02220 I 0.000
Bo00703s150 Brassica oleracea Bo00703s150 I 0.000
S1FA2 Arabidopsis thaliana AT2G37120 I 0.000
Bo1g144300 Brassica oleracea Bo1g144300 I 0.000
Bo3g061880 Brassica oleracea Bo3g061880 I 0.000
Bo5g138130 Brassica oleracea Bo5g138130 I 0.000
BGIOSGA015142 Oryza indica BGIOSGA015142 N 0.000
BGIOSGA015143 Oryza indica BGIOSGA015143 N 0.000
GSMUA_Achr3G17900_001 Musa acuminata GSMUA_Achr3G17900_001 N 0.000
BGIOSGA015145 Oryza indica BGIOSGA015145 N 0.000
BRADI5G09140 Brachypodium distachyon BRADI5G09140 N 0.000
Pavir.Gb01773 Panicum virgatum Pavir.Gb01773 N 0.000
Pavir.Ga01929 Panicum virgatum Pavir.Ga01929 N 0.000
MDP0000276000 Malus domestica MDP0000276000 N 0.000
gene09647-v1.0-hybrid Fragaria vesca gene09647-v1.0-hybrid N 0.000
GRMZM2G056929 Zea mays GRMZM2G056929 N 0.000
Sb06g015340 Sorghum bicolor Sb06g015340 N 0.000
PRUPE_ppa014157mg Prunus persica PRUPE_ppa014157mg N 0.000
OGLUM04G11340 Oryza glumaepatula OGLUM04G11340 N 0.000
OMERI04G10280 Oryza meridionalis OMERI04G10280 N 0.000
ONIVA04G09620 Oryza nivara ONIVA04G09620 N 0.000
OS04G0408900 Oryza sativa OS04G0408900 N 0.000
S1FA2 Oryza sativa OS04G0408700 N 0.000
ORUFI04G12850 Oryza rufipogon ORUFI04G12850 N 0.000
ORUFI04G12840 Oryza rufipogon ORUFI04G12840 N 0.000
ORGLA04G0086800 Oryza glaberrima ORGLA04G0086800 N 0.000
ORGLA04G0086600 Oryza glaberrima ORGLA04G0086600 N 0.000
OGLUM04G11330 Oryza glumaepatula OGLUM04G11330 N 0.000
Si011030m.g Setaria italica Si011030m.g N 0.000
OBART04G11660 Oryza barthii OBART04G11660 N 0.000
GRMZM2G147424 Zea mays GRMZM2G147424 N 0.000
ONIVA04G09610 Oryza nivara ONIVA04G09610 N 0.000
GSMUA_Achr6G23400_001 Musa acuminata GSMUA_Achr6G23400_001 N 0.000
LPERR04G08400 Leersia perrieri LPERR04G08400 N 0.000
MLOC_67411 Hordeum vulgare MLOC_67411 N 0.000
Pm002519 Prunus mume Pm002519 N 0.000
OMERI04G10270 Oryza meridionalis OMERI04G10270 N 0.000
Traes_2DL_032C7FC8C Triticum aestivum Traes_2DL_032C7FC8C N 0.000
Traes_2BL_26A5F9082 Triticum aestivum Traes_2BL_26A5F9082 N 0.000
Traes_2AL_65586C538 Triticum aestivum Traes_2AL_65586C538 N 0.000
OBART04G11650 Oryza barthii OBART04G11650 N 0.000
OPUNC04G09660 Oryza punctata OPUNC04G09660 N 0.000