ANAC004 (Arabidopsis lyrata)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Al_scaffold_0001_137 T291944_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC004
M07161_2.00
Arabidopsis thaliana
CTTVYNYNRYAAGY

RCTTRYNRNRBAAG
Dap-seq
OMalley et al.(2016)
ANAC004_col_a
0.995 0.929
NAC004
M07162_2.00
Arabidopsis thaliana
WVCTTVYNBNRYAAGYWWBNN

NNVWWRCTTRYNVNRBAAGBW
Dap-seq
OMalley et al.(2016)
ANAC004_colamp_a
0.995 0.929
NAC005
M07163_2.00
Arabidopsis thaliana
WWNCTTVYNHHNYAAGTWW

WWACTTRNDDNRBAAGNWW
Dap-seq
OMalley et al.(2016)
ANAC005_col_a
0.977 0.714
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0001_137 NAC/NAM 4 132

Links

Other NAC/NAM family TFs
Other Arabidopsis lyrata TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
NAC004 Arabidopsis thaliana AT1G02230 D 0.995
NAC005 Arabidopsis thaliana AT1G02250 D 0.977
anac005 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1000123 I 0.984
anac048 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1000114 I 0.947
Bostr.5325s0006 Boechera stricta Bostr.5325s0006 I 0.962
Bostr.5325s0016 Boechera stricta Bostr.5325s0016 I 0.988
Bostr.5325s0017 Boechera stricta Bostr.5325s0017 I 0.913
Bostr.8819s0187 Boechera stricta Bostr.8819s0187 I 0.980
Cagra.1968s0040 Capsella grandiflora Cagra.1968s0040 I 0.893
Cagra.1968s0041 Capsella grandiflora Cagra.1968s0041 I 0.916
Carubv10009390m.g Capsella rubella Carubv10009390m.g I 0.921
Bra033308 Brassica rapa Bra033308 I 0.972
Bra033306 Brassica rapa Bra033306 I 0.973
anac048 Arabidopsis thaliana AT3G04420 I 0.928
Bo5g002880 Brassica oleracea Bo5g002880 I 0.898
Bo5g002910 Brassica oleracea Bo5g002910 I 0.965
Bo5g002950 Brassica oleracea Bo5g002950 I 0.973
Bo8g117560 Brassica oleracea Bo8g117560 I 0.926
Bra032615 Brassica rapa Bra032615 I 0.950
Bra033298 Brassica rapa Bra033298 I 0.893
Bra033300 Brassica rapa Bra033300 I 0.968
Bra033303 Brassica rapa Bra033303 I 0.976
Carubv10009727m.g Capsella rubella Carubv10009727m.g I 0.893