CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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POPTR_0011s15230
(
Populus trichocarpa
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02365 (NAM)
IPR003441
POPTR_0011s15230
T295302_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NTL9
M02371_2.00
Arabidopsis thaliana
ATTACTTAA
TTAAGTAAT
PBM
Weirauch et al.(2014)
pTH8207
0.922
0.851
NTL9
M11081_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBNAC_01
0.922
0.851
NTL9
M11082_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBNAC_02
0.922
0.851
For this family, TFs with SR scores >
0.870
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
POPTR_0011s15230.1
NAC/NAM
11
142
PLGFRFRPTDEELISHYLRLKINGRDSEVEVIPEIDICKWEPWDLPGLSVIKTDDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGKDRTIKSRKSAGNTTLIGMKKTLVFYRGRAPNGKRTNWVMHEYRP
POPTR_0011s15230.2
NAC/NAM
11
142
PLGFRFRPTDEELISHYLRLKINGRDSEVEVIPEIDICKWEPWDLPGLSVIKTDDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGKDRTIKSRKSAGNTTLIGMKKTLVFYRGRAPNGKRTNWVMHEYRP
POPTR_0011s15230.3
NAC/NAM
11
142
PLGFRFRPTDEELISHYLRLKINGRDSEVEVIPEIDICKWEPWDLPGLSVIKTDDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGKDRTIKSRKSAGNTTLIGMKKTLVFYRGRAPNGKRTNWVMHEYRP
POPTR_0011s15230.4
NAC/NAM
11
142
PLGFRFRPTDEELISHYLRLKINGRDSEVEVIPEIDICKWEPWDLPGLSVIKTDDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGKDRTIKSRKSAGNTTLIGMKKTLVFYRGRAPNGKRTNWVMHEYRP
Links
Other
NAC/NAM
family TFs
Other
Populus trichocarpa
TFs
49 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy