Carubv10009816m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10009816m.g T297492_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
NAC019
M00972_2.00
Arabidopsis thaliana
NNYACGBMWN

NWKVCGTRNN
PBM
Lindemose et al.(2014)
ANAC019
0.959 0.974
NAC055
M00976_2.00
Arabidopsis thaliana
RYACGKAAN

NTTMCGTRY
PBM
Lindemose et al.(2014)
ANAC055
0.952 0.956
NAC055
M00885_2.00
Arabidopsis thaliana
TTACGTD

HACGTAA
PBM
Franco-Zorrilla et al.(2014)
ANAC55
0.952 0.956
NAC055
M07207_2.00
Arabidopsis thaliana
DDNYNWNWNNNDYACGKMWYY

RRWKMCGTRHNNNWNWNRNHH
Dap-seq
OMalley et al.(2016)
ANAC055_col
0.952 0.956
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009816m NAC/NAM 15 139

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_024_00080 Aquilegia coerulea Aquca_024_00080 I 0.919
ATNAC3 Arabidopsis lyrata fgenesh2_kg.3__1697__AT3G15500.1 I 0.952
RD26 Arabidopsis lyrata fgenesh2_kg.7__1491__AT4G27410.3 I 0.890
ANAC019 Arabidopsis lyrata fgenesh2_kg.1__4367__AT1G52890.1 I 0.959
RD26 Arabidopsis thaliana AT4G27410 I 0.890
NAC055 Arabidopsis thaliana AT3G15500 D 0.952
NAC019 Arabidopsis thaliana AT1G52890 D 0.959
Bostr.7867s0562 Boechera stricta Bostr.7867s0562 I 0.890
Bostr.28625s0149 Boechera stricta Bostr.28625s0149 I 0.951
Bostr.0124s0082 Boechera stricta Bostr.0124s0082 I 0.960
Bo7g111390 Brassica oleracea Bo7g111390 I 0.887
Bo6g030940 Brassica oleracea Bo6g030940 I 0.953
Bo1g048300 Brassica oleracea Bo1g048300 I 0.890
Bo1g128450 Brassica oleracea Bo1g128450 I 0.951
Bo3g066850 Brassica oleracea Bo3g066850 I 0.928
Bo5g127040 Brassica oleracea Bo5g127040 I 0.951
Bra019052 Brassica rapa Bra019052 I 0.887
Bra001596 Brassica rapa Bra001596 I 0.942
Bra018998 Brassica rapa Bra018998 I 0.953
Bra027238 Brassica rapa Bra027238 I 0.951
Bra026353 Brassica rapa Bra026353 I 0.890
Bra021113 Brassica rapa Bra021113 I 0.951
PK20135.1 Cannabis sativa PK20135.1 I 0.904
Cagra.0946s0025 Capsella grandiflora Cagra.0946s0025 I 0.970
Cagra.0570s0027 Capsella grandiflora Cagra.0570s0027 I 0.890
Cagra.0007s0097 Capsella grandiflora Cagra.0007s0097 I 0.952
Carubv10005353m.g Capsella rubella Carubv10005353m.g I 0.890
Carubv10014211m.g Capsella rubella Carubv10014211m.g I 0.952
evm.TU.supercontig_80.93 Carica papaya evm.TU.supercontig_80.93 I 0.922
Ca_21186 Cicer arietinum Ca_21186 I 0.900
Cla011949 Citrullus lanatus Cla011949 I 0.918
Cla023770 Citrullus lanatus Cla023770 I 0.876
Ciclev10008812m.g Citrus clementina Ciclev10008812m.g I 0.915
orange1.1g019011m.g Citrus sinensis orange1.1g019011m.g I 0.915
Cucsa.074610 Cucumis sativus Cucsa.074610 I 0.919
Cucsa.341800 Cucumis sativus Cucsa.341800 I 0.887
Eucgr.F01093 Eucalyptus grandis Eucgr.F01093 I 0.907
Thhalv10025818m.g Eutrema salsugineum Thhalv10025818m.g I 0.887
Thhalv10011676m.g Eutrema salsugineum Thhalv10011676m.g I 0.946
Thhalv10021174m.g Eutrema salsugineum Thhalv10021174m.g I 0.951
gene31149-v1.0-hybrid Fragaria vesca gene31149-v1.0-hybrid I 0.915
GLYMA06G38410 Glycine max GLYMA06G38410 I 0.904
GLYMA13G35550 Glycine max GLYMA13G35550 I 0.912
GLYMA12G35000 Glycine max GLYMA12G35000 I 0.913
GLYMA12G22880 Glycine max GLYMA12G22880 I 0.893
Gorai.009G433200 Gossypium raimondii Gorai.009G433200 I 0.914
Gorai.002G073700 Gossypium raimondii Gorai.002G073700 I 0.920
chr3.CM0590.390.nd Lotus japonicus chr3.CM0590.390.nd I 0.911
LjSGA_036303.1 Lotus japonicus LjSGA_036303.1 I 0.897
MDP0000262032 Malus domestica MDP0000262032 I 0.914
MDP0000132623 Malus domestica MDP0000132623 I 0.914
cassava2098.valid.m1 Manihot esculenta cassava2098.valid.m1 I 0.925
cassava42313.valid.m1 Manihot esculenta cassava42313.valid.m1 I 0.919
MTR_2g079990 Medicago truncatula MTR_2g079990 I 0.917
MTR_8g059170 Medicago truncatula MTR_8g059170 I 0.875
mgf001766m Mimulus guttatus mgf001766m I 0.876
POPTR_0001s41460 Populus trichocarpa POPTR_0001s41460 I 0.903
POPTR_1659s00200 Populus trichocarpa POPTR_1659s00200 I 0.903
POPTR_0011s12400 Populus trichocarpa POPTR_0011s12400 I 0.896
Pm011603 Prunus mume Pm011603 I 0.921
PRUPE_ppa008301mg Prunus persica PRUPE_ppa008301mg I 0.920
28219.m000090 Ricinus communis 28219.m000090 I 0.910
SapurV1A.0127s0020 Salix purpurea SapurV1A.0127s0020 I 0.885
SapurV1A.1471s0010 Salix purpurea SapurV1A.1471s0010 I 0.901
SapurV1A.0864s0080 Salix purpurea SapurV1A.0864s0080 I 0.901
Solyc12g013620.1 Solanum lycopersicum Solyc12g013620.1 I 0.897
Solyc07g063410.2 Solanum lycopersicum Solyc07g063410.2 I 0.916
PGSC0003DMG400019294 Solanum tuberosum PGSC0003DMG400019294 I 0.920
PGSC0003DMG400015342 Solanum tuberosum PGSC0003DMG400015342 I 0.902
TCM_031364 Theobroma cacao TCM_031364 I 0.895
VIT_19s0014g03290 Vitis vinifera VIT_19s0014g03290 I 0.907