CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CBG23380
(
Caenorhabditis briggsae
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
CBG23380
T301622_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CBG23380
M01296_2.00
Caenorhabditis briggsae
NDBDHHANWN
NWNTDDHVHN
PBM
Lambert et al.(2019)
pTH11449
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nhr-154
M00698_2.00
Caenorhabditis elegans
NRBRYCAHWD
HWDTGRYVYN
PBM
Narasimhan et al.(2015)
pTH10650
0.990
0.928
For this family, TFs with SR scores >
0.745
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M01296_2.00
Nuclear receptor
51
124
SKCLVCRNPAIGYHYDVPSCNGCKTFFRRTIITGRKFECTKNRVCMEGTEPVDMSKRLCRACRFAKCVEVGMNP
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG23380
Nuclear receptor
80
153
SKCLVCRNPAIGYHYDVPSCNGCKTFFRRTIITGRKFECTKNRVCMEGTEPVDMSKRLCRACRFAKCVEVGMNP
Links
Other
Nuclear receptor
family TFs
Other
Caenorhabditis briggsae
TFs
66 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy