CRE27050 (Caenorhabditis remanei)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00105 (zf-C4) IPR001628 CRE27050 T302287_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CBG23380
M01296_2.00
Caenorhabditis briggsae
NDBDHHANWN

NWNTDDHVHN
PBM
Lambert et al.(2019)
pTH11449
0.991 0.986
nhr-154
M00698_2.00
Caenorhabditis elegans
NRBRYCAHWD

HWDTGRYVYN
PBM
Narasimhan et al.(2015)
pTH10650
0.990 0.928
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CRE27050 Nuclear receptor 79 152

Links

Other Nuclear receptor family TFs
Other Caenorhabditis remanei TFs

66 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_10869 Aegilops tauschii F775_10869 N 0.000
AMTR_s00159p00062070 Amborella trichopoda AMTR_s00159p00062070 N 0.000
Aquca_009_00241 Aquilegia coerulea Aquca_009_00241 N 0.000
fgenesh2_kg.4__2311__AT2G41710.2 Arabidopsis lyrata fgenesh2_kg.4__2311__AT2G41710.2 N 0.000
AT2G41710 Arabidopsis thaliana AT2G41710 N 0.000
Bostr.11568s0008 Boechera stricta Bostr.11568s0008 N 0.000
BRADI2G26987 Brachypodium distachyon BRADI2G26987 N 0.000
Bo4g013420 Brassica oleracea Bo4g013420 N 0.000
Bo3g035770 Brassica oleracea Bo3g035770 N 0.000
Bra004641 Brassica rapa Bra004641 N 0.000
PK15670.1 Cannabis sativa PK15670.1 N 0.000
PK18855.1 Cannabis sativa PK18855.1 N 0.000
Cagra.0914s0005 Capsella grandiflora Cagra.0914s0005 N 0.000
Carubv10023272m.g Capsella rubella Carubv10023272m.g N 0.000
evm.TU.supercontig_129.70 Carica papaya evm.TU.supercontig_129.70 N 0.000
evm.TU.supercontig_224.4 Carica papaya evm.TU.supercontig_224.4 N 0.000
evm.TU.supercontig_99.39 Carica papaya evm.TU.supercontig_99.39 N 0.000
Ca_07237 Cicer arietinum Ca_07237 N 0.000
Cla022214 Citrullus lanatus Cla022214 N 0.000
Ciclev10005012m.g Citrus clementina Ciclev10005012m.g N 0.000
orange1.1g018292m.g Citrus sinensis orange1.1g018292m.g N 0.000
Cucsa.353040 Cucumis sativus Cucsa.353040 I 0.000
Cucsa.338170 Cucumis sativus Cucsa.338170 N 0.000
Eucgr.A02341 Eucalyptus grandis Eucgr.A02341 N 0.000
Thhalv10016812m.g Eutrema salsugineum Thhalv10016812m.g N 0.000
gene02470-v1.0-hybrid Fragaria vesca gene02470-v1.0-hybrid N 0.000
GLYMA02G33090 Glycine max GLYMA02G33090 N 0.000
GLYMA19G31960 Glycine max GLYMA19G31960 N 0.000
GLYMA03G29240 Glycine max GLYMA03G29240 N 0.000
Gorai.003G091500 Gossypium raimondii Gorai.003G091500 N 0.000
MLOC_7325 Hordeum vulgare MLOC_7325 N 0.000
LPERR05G11930 Leersia perrieri LPERR05G11930 N 0.000
Lus10000965.g Linum usitatissimum Lus10000965.g N 0.000
Lus10011730.g Linum usitatissimum Lus10011730.g N 0.000
Lus10039650.g Linum usitatissimum Lus10039650.g N 0.000
Lus10040140.g Linum usitatissimum Lus10040140.g N 0.000
LjSGA_012098.1 Lotus japonicus LjSGA_012098.1 N 0.000
chr3.CM0452.130.nd Lotus japonicus chr3.CM0452.130.nd N 0.000
MDP0000803527 Malus domestica MDP0000803527 N 0.000
MDP0000314518 Malus domestica MDP0000314518 N 0.000
cassava19560.m1 Manihot esculenta cassava19560.m1 N 0.000
cassava421.valid.m1 Manihot esculenta cassava421.valid.m1 N 0.000
cassava40681.m1 Manihot esculenta cassava40681.m1 N 0.000
MTR_7g091390 Medicago truncatula MTR_7g091390 N 0.000
mgf019897m Mimulus guttatus mgf019897m N 0.000
mgf017600m Mimulus guttatus mgf017600m N 0.000
OBART06G23380 Oryza barthii OBART06G23380 N 0.000
OBART05G15060 Oryza barthii OBART05G15060 N 0.000
OB03G42600 Oryza brachyantha OB03G42600 N 0.000
OB06G31060 Oryza brachyantha OB06G31060 N 0.000
OB05G22940 Oryza brachyantha OB05G22940 N 0.000
ORGLA05G0129100 Oryza glaberrima ORGLA05G0129100 N 0.000
OGLUM05G15890 Oryza glumaepatula OGLUM05G15890 N 0.000
OGLUM06G03000 Oryza glumaepatula OGLUM06G03000 N 0.000
BGIOSGA023402 Oryza indica BGIOSGA023402 N 0.000
BGIOSGA019793 Oryza indica BGIOSGA019793 N 0.000
OLONG_020459 Oryza longistaminata OLONG_020459 N 0.000
OLONG_002212 Oryza longistaminata OLONG_002212 N 0.000
OMERI05G13370 Oryza meridionalis OMERI05G13370 N 0.000
OMERI06G23370 Oryza meridionalis OMERI06G23370 N 0.000
ONIVA05G15390 Oryza nivara ONIVA05G15390 N 0.000
OPUNC05G13110 Oryza punctata OPUNC05G13110 N 0.000
ORUFI05G16140 Oryza rufipogon ORUFI05G16140 N 0.000
Pavir.Ca01410 Panicum virgatum Pavir.Ca01410 N 0.000
Pavir.Cb01456 Panicum virgatum Pavir.Cb01456 N 0.000
PDK_20s1313371g002 Phoenix dactylifera PDK_20s1313371g002 N 0.000
POPTR_0016s05670 Populus trichocarpa POPTR_0016s05670 N 0.000
POPTR_0006s04820 Populus trichocarpa POPTR_0006s04820 N 0.000
PRUPE_ppa006202mg Prunus persica PRUPE_ppa006202mg N 0.000
30006.m000282 Ricinus communis 30006.m000282 N 0.000
30170.m013669 Ricinus communis 30170.m013669 N 0.000
SapurV1A.3066s0020 Salix purpurea SapurV1A.3066s0020 N 0.000
SapurV1A.0037s0030 Salix purpurea SapurV1A.0037s0030 N 0.000
Si021952m.g Setaria italica Si021952m.g N 0.000
Solyc02g030210.2 Solanum lycopersicum Solyc02g030210.2 N 0.000
Sb09g019190 Sorghum bicolor Sb09g019190 N 0.000
TCM_024554 Theobroma cacao TCM_024554 N 0.000
Traes_6AS_53FA034C9 Triticum aestivum Traes_6AS_53FA034C9 N 0.000
TRIUR3_07433 Triticum urartu TRIUR3_07433 N 0.000
VIT_08s0007g08580 Vitis vinifera VIT_08s0007g08580 N 0.000
BBM Vitis vinifera VIT_04s0023g00950 N 0.000
GRMZM2G013657 Zea mays GRMZM2G013657 N 0.000
GRMZM2G146688 Zea mays GRMZM2G146688 N 0.000