CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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nr1d1
(
Danio rerio
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
ENSDARG00000033160
T302877_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Enables DNA-binding transcription repressor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Acts upstream of or within autophagy; circadian regulation of gene expression; and regulation of locomotor rhythm. Located in chromatin. Is expressed in nervous system. Human ortholog(s) of this gene implicated in brain small vessel disease. Orthologous to human NR1D1 (nuclear receptor subfamily 1 group D member 1). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NR1D2
M05659_2.00
Homo sapiens
DWWNKRKGTYANTRKGTYRN
NYRACMYANTRACMYMNWWH
SELEX
Yin et al.(2017)
NR1D2_eDBD_HT-SELEX
0.985
0.957
Nr1d2
M09313_2.00
Mus musculus
NVRDVWVTRRGTCANDVDN
NHBHNTGACYYABWBHYBN
Misc
Kulakovskiy et al.(2013)
NR1D2_MOUSE.H11MO.0.A
0.985
0.957
NR1D2
M05660_2.00
Homo sapiens
NWWNBRGGKYAVTRGGKCRN
NYGMCCYABTRMCCYVNWWN
SELEX
Yin et al.(2017)
NR1D2_eDBD_Methyl-HT-SELEX
0.985
0.957
NR1D1
M05605_2.00
Homo sapiens
NWWNTRGGTYASTRGGTCAN
NTGACCYASTRACCYANWWN
SELEX
Yin et al.(2017)
NR1D1_eDBD_HT-SELEX
0.985
0.943
NR1D1
M09276_2.00
Homo sapiens
DRVNMASTGGGNCANDNDN
NHNHNTGNCCCASTKNBYH
Misc
Kulakovskiy et al.(2013)
NR1D1_HUMAN.H11MO.0.B
0.985
0.943
Nr1d1
M09310_2.00
Mus musculus
DRVNMASTGGGNCANDNDN
NHNHNTGNCCCASTKNBYH
Misc
Kulakovskiy et al.(2013)
NR1D1_MOUSE.H11MO.0.A
0.985
0.943
NR1D1
M11136_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$REVERBALPHA_Q6
0.985
0.943
NR1D1
M05606_2.00
Homo sapiens
NAWNKRGGTYAGTRGGTCRN
NYGACCYACTRACCYMNWTN
SELEX
Yin et al.(2017)
NR1D1_eDBD_Methyl-HT-SELEX
0.985
0.943
Eip75B
M03928_2.00
Drosophila melanogaster
MWVTAGGTCANN
NNTGACCTABWK
SELEX
Nitta et al.(2015)
Eip75B_1
0.920
0.771
Eip75B
M03929_2.00
Drosophila melanogaster
AWNTRGGTCANTRGGTCA
TGACCYANTGACCYANWT
SELEX
Nitta et al.(2015)
Eip75B_2
0.920
0.771
Eip75B
M06416_2.00
Drosophila melanogaster
KWWNTRGGTCA
TGACCYANWWM
B1H
Zhu et al.(2011)
Eip75B_SANGER_5_FBgn0000568
0.920
0.771
sex-1
M02416_2.00
Caenorhabditis elegans
RAGGTCAH
DTGACCTY
PBM
Weirauch et al.(2014)
pTH5667
0.905
0.686
CBG17178
M02392_2.00
Caenorhabditis briggsae
RAGGTCAH
DTGACCTY
PBM
Weirauch et al.(2014)
pTH6634
0.904
0.657
Eip78C
M06427_2.00
Drosophila melanogaster
RGGTCA
TGACCY
B1H
Zhu et al.(2011)
Eip78C_SANGER_5_FBgn0004865
0.903
0.700
Rara
M00185_2.00
Mus musculus
NRGGTCAN
NTGACCYN
PBM
Badis et al.(2009)
Rara_1051
0.867
0.586
RARA
M03369_2.00
Homo sapiens
RRAGGTCAWBWRRGGTCA
TGACCYYWVWTGACCTYY
SELEX
Jolma et al.(2013)
RARA_1
0.867
0.586
RARA
M03370_2.00
Homo sapiens
RAGGTCAAAAGGTCAWKB
VMWTGACCTTTTGACCTY
SELEX
Jolma et al.(2013)
RARA_2
0.867
0.586
RARA
M03371_2.00
Homo sapiens
AGGTCAHNYWRAGGTCA
TGACCTYWRNDTGACCT
SELEX
Jolma et al.(2013)
RARA_3
0.867
0.586
RARA
M03372_2.00
Homo sapiens
ARGGTCAAAAGGTCA
TGACCTTTTGACCYT
SELEX
Jolma et al.(2013)
RARA_4
0.867
0.586
RARA
M03373_2.00
Homo sapiens
WRRGGTCAHSHRRGGTCA
TGACCYYDSDTGACCYYW
SELEX
Jolma et al.(2013)
RARA_5
0.867
0.586
RARA
M03374_2.00
Homo sapiens
AGGTCAWNNARAGGTCA
TGACCTYTNNWTGACCT
SELEX
Jolma et al.(2013)
RARA_6
0.867
0.586
Rara
M03432_2.00
Mus musculus
AAAGGTCAHBVRAGGTCA
TGACCTYBVDTGACCTTT
SELEX
Jolma et al.(2013)
Rara_1
0.867
0.586
Rara
M03433_2.00
Mus musculus
AGGTCAHNHAAAGGTCA
TGACCTTTDNDTGACCT
SELEX
Jolma et al.(2013)
Rara_2
0.867
0.586
Rara
M03434_2.00
Mus musculus
RAGGTCAAAAGGTCA
TGACCTTTTGACCTY
SELEX
Jolma et al.(2013)
Rara_3
0.867
0.586
RARA
M05607_2.00
Homo sapiens
NVGGKCANNRGGKCAN
NTGMCCYNNTGMCCBN
SELEX
Yin et al.(2017)
RARA_eDBD_HT-SELEX_1
0.867
0.586
RARA
M05608_2.00
Homo sapiens
NVGGKCAYGNCCBN
NVGGNCRTGMCCBN
SELEX
Yin et al.(2017)
RARA_eDBD_HT-SELEX_2
0.867
0.586
RARA
M05609_2.00
Homo sapiens
NRRGGTCANV
BNTGACCYYN
SELEX
Yin et al.(2017)
RARA_eDBD_HT-SELEX_3
0.867
0.586
RARA
M05878_2.00
Homo sapiens
RAGGTCA
TGACCTY
SMiLE-seq
Isakova et al.(2017)
RARa
0.867
0.586
RARA
M09277_2.00
Homo sapiens
RRRDVDBSNDRAGKTCARGG
CCYTGAMCTYHNSVHBHYYY
Misc
Kulakovskiy et al.(2013)
RARA_HUMAN.H11MO.0.A
0.867
0.586
Rara
M09329_2.00
Mus musculus
RGRTCRDRAGKTCAAGGTCA
TGACCTTGAMCTYHYGAYCY
Misc
Kulakovskiy et al.(2013)
RARA_MOUSE.H11MO.0.A
0.867
0.586
RARA
M11137_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NR1B1_Q6
0.867
0.586
RARA
M05610_2.00
Homo sapiens
DRGGKCRNDRGGTCRN
NYGACCYHNYGMCCYH
SELEX
Yin et al.(2017)
RARA_eDBD_Methyl-HT-SELEX_1
0.867
0.586
RARA
M05611_2.00
Homo sapiens
NVGGTCAYGMCCYN
NRGGKCRTGACCBN
SELEX
Yin et al.(2017)
RARA_eDBD_Methyl-HT-SELEX_2
0.867
0.586
RARA
M05612_2.00
Homo sapiens
NRAGGTCANN
NNTGACCTYN
SELEX
Yin et al.(2017)
RARA_eDBD_Methyl-HT-SELEX_3
0.867
0.586
Rarb
M02401_2.00
Mus musculus
NRRGGTCAHN
NDTGACCYYN
PBM
Weirauch et al.(2014)
pTH2804
0.865
0.586
RARB
M03355_2.00
Homo sapiens
AAAGGTCAARAGGTCA
TGACCTYTTGACCTTT
SELEX
Jolma et al.(2013)
RARB_1
0.865
0.586
Rarb
M03423_2.00
Mus musculus
WAAGGTCAAAAGGTCA
TGACCTTTTGACCTTW
SELEX
Jolma et al.(2013)
Rarb_1
0.865
0.586
Rarb
M03424_2.00
Mus musculus
RRAGGTCANBWRAGGTCA
TGACCTYWVNTGACCTYY
SELEX
Jolma et al.(2013)
Rarb_2
0.865
0.586
Rarb
M03425_2.00
Mus musculus
AGGTCAHVBWRAGGTCA
TGACCTYWVBDTGACCT
SELEX
Jolma et al.(2013)
Rarb_3
0.865
0.586
RARB
M05563_2.00
Homo sapiens
NHAAGGTCAN
NTGACCTTDN
SELEX
Yin et al.(2017)
RARB_FL_HT-SELEX_1
0.865
0.586
RARB
M05564_2.00
Homo sapiens
RRGGTCAARRGGTCAN
NTGACCYYTTGACCYY
SELEX
Yin et al.(2017)
RARB_FL_HT-SELEX_2
0.865
0.586
RARB
M05565_2.00
Homo sapiens
DAGGTCAYGACCYY
RRGGTCRTGACCTH
SELEX
Yin et al.(2017)
RARB_FL_HT-SELEX_3
0.865
0.586
RARB
M11094_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NR1B2_Q6
0.865
0.586
RARB
M05566_2.00
Homo sapiens
NHRAGGTCAH
DTGACCTYDN
SELEX
Yin et al.(2017)
RARB_FL_Methyl-HT-SELEX_1
0.865
0.586
RARB
M05567_2.00
Homo sapiens
RRGGTCAHRRGGTCAN
NTGACCYYDTGACCYY
SELEX
Yin et al.(2017)
RARB_FL_Methyl-HT-SELEX_2
0.865
0.586
RARB
M05568_2.00
Homo sapiens
RRGGTCAYGACCYY
RRGGTCRTGACCYY
SELEX
Yin et al.(2017)
RARB_FL_Methyl-HT-SELEX_3
0.865
0.586
Rorc
M09324_2.00
Mus musculus
NDAWSTRRGTCA
TGACYYASWTHN
Misc
Kulakovskiy et al.(2013)
RORG_MOUSE.H11MO.0.B
0.853
0.600
Rorc
M09617_2.00
Mus musculus
AWBTRGGTCA
TGACCYAVWT
Misc
Heinz et al.(2010)
EL4-RORgt.Flag_GSE56019
0.853
0.600
RARG
M02397_2.00
Homo sapiens
VGGTCANN
NNTGACCB
PBM
Weirauch et al.(2014)
pTH5430
0.844
0.571
Rarg
M00810_2.00
Mus musculus
NNVGKTCANN
NNTGAMCBNN
PBM
Weirauch et al.(2013)
pTH4269
0.844
0.571
RARG
M03391_2.00
Homo sapiens
SRGGTCAAAAGGTCAVD
HBTGACCTTTTGACCYS
SELEX
Jolma et al.(2013)
RARG_1
0.844
0.571
RARG
M03392_2.00
Homo sapiens
RAGGTCAHVHWRAGGTCA
TGACCTYWDBDTGACCTY
SELEX
Jolma et al.(2013)
RARG_2
0.844
0.571
RARG
M03393_2.00
Homo sapiens
RRGGTCAHNNRAGGTCA
TGACCTYNNDTGACCYY
SELEX
Jolma et al.(2013)
RARG_3
0.844
0.571
RARG
M03394_2.00
Homo sapiens
GAGGTCAAAAGGTCAY
RTGACCTTTTGACCTC
SELEX
Jolma et al.(2013)
RARG_4
0.844
0.571
RARG
M03395_2.00
Homo sapiens
RAGGTCAABYARRGKTCA
TGAMCYYTRVTTGACCTY
SELEX
Jolma et al.(2013)
RARG_5
0.844
0.571
RARG
M03396_2.00
Homo sapiens
RAGGTCAHBNVRGGTCA
TGACCYBNVDTGACCTY
SELEX
Jolma et al.(2013)
RARG_6
0.844
0.571
Rarg
M03416_2.00
Mus musculus
RRGGTCAAAAGGTCAH
DTGACCTTTTGACCYY
SELEX
Jolma et al.(2013)
Rarg_1
0.844
0.571
Rarg
M03417_2.00
Mus musculus
RAGGTCAWVHAAAGGTCA
TGACCTTTDBWTGACCTY
SELEX
Jolma et al.(2013)
Rarg_2
0.844
0.571
Rarg
M03418_2.00
Mus musculus
AAGGTCAHSARAGGTCA
TGACCTYTSDTGACCTT
SELEX
Jolma et al.(2013)
Rarg_3
0.844
0.571
RARG
M05653_2.00
Homo sapiens
NRGGTCANV
BNTGACCYN
SELEX
Yin et al.(2017)
RARG_FL_HT-SELEX
0.844
0.571
RARG
M05649_2.00
Homo sapiens
DRGGTCAAAAGKTCAN
NTGAMCTTTTGACCYH
SELEX
Yin et al.(2017)
RARG_eDBD_HT-SELEX_1
0.844
0.571
RARG
M05650_2.00
Homo sapiens
RAGGTCATGACCTH
DAGGTCATGACCTY
SELEX
Yin et al.(2017)
RARG_eDBD_HT-SELEX_2
0.844
0.571
Rarg
M05885_2.00
Mus musculus
NRGGTCANDRGKKYA
TRMMCYHNTGACCYN
SMiLE-seq
Isakova et al.(2017)
RARg
0.844
0.571
RARG
M09289_2.00
Homo sapiens
RGGTCAVVVWGNMMNNDV
BHNNKKNCWBBBTGACCY
Misc
Kulakovskiy et al.(2013)
RARG_HUMAN.H11MO.0.B
0.844
0.571
Rarg
M09300_2.00
Mus musculus
RGGTCAVVVWGNMMNNDV
BHNNKKNCWBBBTGACCY
Misc
Kulakovskiy et al.(2013)
RARG_MOUSE.H11MO.0.C
0.844
0.571
Rarg
M09613_2.00
Mus musculus
RGKTCAAGGBCA
TGVCCTTGAMCY
Misc
Heinz et al.(2010)
ES-RARg_GSE30538
0.844
0.571
RARG
M11167_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RARG_Q3
0.844
0.571
RARG
M05654_2.00
Homo sapiens
NRGGTCRNV
BNYGACCYN
SELEX
Yin et al.(2017)
RARG_FL_Methyl-HT-SELEX
0.844
0.571
RARG
M05651_2.00
Homo sapiens
DRGGTCAARRGGTCRN
NYGACCYYTTGACCYH
SELEX
Yin et al.(2017)
RARG_eDBD_Methyl-HT-SELEX_1
0.844
0.571
RARG
M05652_2.00
Homo sapiens
DAGKTCRYGACCYY
RRGGTCRYGAMCTH
SELEX
Yin et al.(2017)
RARG_eDBD_Methyl-HT-SELEX_2
0.844
0.571
Rorb
M00820_2.00
Mus musculus
NRGGTCANN
NNTGACCYN
PBM
Weirauch et al.(2013)
pTH3469
0.830
0.614
rorb
M02404_2.00
Tetraodon nigroviridis
NGAGGTCANN
NNTGACCTCN
PBM
Weirauch et al.(2014)
pTH6589
0.830
0.614
RORB
M05677_2.00
Homo sapiens
DAWNTRGGTYAGTRGGTCAN
NTGACCYACTRACCYANWTH
SELEX
Yin et al.(2017)
RORB_eDBD_HT-SELEX_1
0.830
0.614
RORB
M05678_2.00
Homo sapiens
NAWNKRGGTCAYGACCYMNWTN
NAWNKRGGTCRTGACCYMNWTN
SELEX
Yin et al.(2017)
RORB_eDBD_HT-SELEX_2
0.830
0.614
RORB
M05883_2.00
Homo sapiens
AWNBRGGTCAN
NTGACCYVNWT
SMiLE-seq
Isakova et al.(2017)
RORb
0.830
0.614
RORB
M11187_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RORBETA_Q2
0.830
0.614
RORB
M05679_2.00
Homo sapiens
DAWBTRGGTYAGTRGGTCRN
NYGACCYACTRACCYAVWTH
SELEX
Yin et al.(2017)
RORB_eDBD_Methyl-HT-SELEX_1
0.830
0.614
RORB
M05680_2.00
Homo sapiens
NAWNKRGGTCAYGACCYMNWTN
NAWNKRGGTCRTGACCYMNWTN
SELEX
Yin et al.(2017)
RORB_eDBD_Methyl-HT-SELEX_2
0.830
0.614
Rora
M00819_2.00
Mus musculus
NNRGGTCA
TGACCYNN
PBM
Weirauch et al.(2013)
pTH3464
0.830
0.614
RORA
M03353_2.00
Homo sapiens
NMRAGGTCAAVYYVAGGTCA
TGACCTBRRBTTGACCTYKN
SELEX
Jolma et al.(2013)
RORA_1
0.830
0.614
RORA
M03354_2.00
Homo sapiens
WAWSTRGGTYASTAGGTCA
TGACCTASTRACCYASWTW
SELEX
Jolma et al.(2013)
RORA_2
0.830
0.614
RORA
M02705_2.00
Homo sapiens
WWVDAGGTCA
TGACCTHBWW
SELEX
Mathelier et al.(2014)
MA0071.1
0.830
0.614
RORA
M02706_2.00
Homo sapiens
NDWAWBTAGGTCAN
NTGACCTAVWTWHN
SELEX
Mathelier et al.(2014)
MA0072.1
0.830
0.614
RORA
M09265_2.00
Homo sapiens
VWNDRGGBCARDR
YHYTGVCCYHNWB
Misc
Kulakovskiy et al.(2013)
RORA_HUMAN.H11MO.0.C
0.830
0.614
Rora
M09327_2.00
Mus musculus
VWNDRGGBCARDR
YHYTGVCCYHNWB
Misc
Kulakovskiy et al.(2013)
RORA_MOUSE.H11MO.0.C
0.830
0.614
RORA
M11090_2.00
Homo sapiens
DWWWVDAGGTCAH
DTGACCTHBWWWH
Transfac
Matys et al.(2006)
V$RORA1_01
0.830
0.614
RORA
M11091_2.00
Homo sapiens
DWAWBTAGGTCAN
NTGACCTAVWTWH
Transfac
Matys et al.(2006)
V$RORA2_01
0.830
0.614
RORA
M11092_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RORALPHA_Q4
0.830
0.614
RORA
M11093_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RORA_Q4
0.830
0.614
AAEL009588
M02388_2.00
Aedes aegypti
NRGGTCR
YGACCYN
PBM
Weirauch et al.(2014)
pTH5508
0.828
0.600
Hr46
M02406_2.00
Drosophila melanogaster
NRGGTCAN
NTGACCYN
PBM
Weirauch et al.(2014)
pTH6142
0.828
0.600
Hr46
M03926_2.00
Drosophila melanogaster
RGGTCAGTRGGTCA
TGACCYACTGACCY
SELEX
Nitta et al.(2015)
Hr46_1
0.828
0.600
Hr46
M06412_2.00
Drosophila melanogaster
AWKTGGGTYW
WRACCCAMWT
B1H
Zhu et al.(2011)
Hr46_FlyReg_FBgn0000448
0.828
0.600
Hr46
M06413_2.00
Drosophila melanogaster
HWNBAGGTCA
TGACCTVNWD
B1H
Zhu et al.(2011)
Hr46_SANGER_5_FBgn0000448
0.828
0.600
PPARD
M05581_2.00
Homo sapiens
NRRGGTCAAAGGTCAN
NTGACCTTTGACCYYN
SELEX
Yin et al.(2017)
PPARD_eDBD_HT-SELEX_1
0.822
0.629
PPARD
M05582_2.00
Homo sapiens
HRRGGTCAYGACCYYD
HRRGGTCRTGACCYYD
SELEX
Yin et al.(2017)
PPARD_eDBD_HT-SELEX_2
0.822
0.629
PPARD
M05583_2.00
Homo sapiens
NRRGGTCAAAGGTCRN
NYGACCTTTGACCYYN
SELEX
Yin et al.(2017)
PPARD_eDBD_Methyl-HT-SELEX_1
0.822
0.629
PPARD
M05584_2.00
Homo sapiens
NRRGGTCRCGACCYYN
NRRGGTCGYGACCYYN
SELEX
Yin et al.(2017)
PPARD_eDBD_Methyl-HT-SELEX_2
0.822
0.629
RORC
M02405_2.00
Tetraodon nigroviridis
NGAGGTCANN
NNTGACCTCN
PBM
Weirauch et al.(2014)
pTH6612
0.816
0.571
RORC
M05621_2.00
Homo sapiens
KRGGTCAYGMCCYM
KRGGKCRTGACCYM
SELEX
Yin et al.(2017)
RORC_eDBD_HT-SELEX_1
0.809
0.586
RORC
M05622_2.00
Homo sapiens
NAWNKRGGTYANTRGGTCAN
NTGACCYANTRACCYMNWTN
SELEX
Yin et al.(2017)
RORC_eDBD_HT-SELEX_2
0.809
0.586
RORC
M05880_2.00
Homo sapiens
NDAWNTRGGKCA
TGMCCYANWTHN
SMiLE-seq
Isakova et al.(2017)
RORc
0.809
0.586
RORC
M09282_2.00
Homo sapiens
NDAWSTRRGTCA
TGACYYASWTHN
Misc
Kulakovskiy et al.(2013)
RORG_HUMAN.H11MO.0.C
0.809
0.586
RORC
M05623_2.00
Homo sapiens
TRGGTCAYGACCYA
TRGGTCRTGACCYA
SELEX
Yin et al.(2017)
RORC_eDBD_Methyl-HT-SELEX_1
0.809
0.586
RORC
M05624_2.00
Homo sapiens
NAWNTRGGTYASTAGGTCAN
NTGACCTASTRACCYANWTN
SELEX
Yin et al.(2017)
RORC_eDBD_Methyl-HT-SELEX_2
0.809
0.586
PPARA
M09295_2.00
Homo sapiens
NWSTRGGBSARAGGKBA
TVMCCTYTSVCCYASWN
Misc
Kulakovskiy et al.(2013)
PPARA_HUMAN.H11MO.0.B
0.786
0.629
Ppara
M09314_2.00
Mus musculus
HWSTRGGBSARAGGKBA
TVMCCTYTSVCCYASWD
Misc
Kulakovskiy et al.(2013)
PPARA_MOUSE.H11MO.0.A
0.786
0.629
PPARA
M11183_2.00
Homo sapiens
CWRAWCYAGGNCAWAGKTCA
TGAMCTWTGNCCTRGWTYWG
Transfac
Matys et al.(2006)
V$PPARA_01
0.786
0.629
PPARA
M11184_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PPARA_Q6
0.786
0.629
Smp_105090
M02412_2.00
Schistosoma mansoni
RGGTCANN
NNTGACCY
PBM
Weirauch et al.(2014)
pTH6174
0.781
0.557
NR2C2
M03407_2.00
Homo sapiens
VRGGTCAAAGGTCA
TGACCTTTGACCYB
SELEX
Jolma et al.(2013)
NR2C2_1
0.774
0.557
NR2C2
M05669_2.00
Homo sapiens
NRGGTCRN
NYGACCYN
SELEX
Yin et al.(2017)
NR2C2_eDBD_HT-SELEX
0.774
0.557
NR2C2
M08156_2.00
Homo sapiens
NVRGGTCARAGGKCA
TGMCCTYTGACCYBN
ChIP-seq
Mathelier et al.(2014)
MA0504.1
0.774
0.557
NR2C2
M07990_2.00
Homo sapiens
WBYRCTTCCGGGKYV
BRMCCCGGAAGYRVW
ChIP-seq
Gerstein et al.(2012)
HeLa-S3_TR4_UCD
0.774
0.557
NR2C2
M07991_2.00
Homo sapiens
DWBYRCTTCCGGGKY
RMCCCGGAAGYRVWH
ChIP-seq
Gerstein et al.(2012)
HepG2b_TR4_UCD
0.774
0.557
NR2C2
M07992_2.00
Homo sapiens
WBYRCTTCCGGGKYR
YRMCCCGGAAGYRVW
ChIP-seq
Gerstein et al.(2012)
K562b_TR4_UCD
0.774
0.557
NR2C2
M08221_2.00
Homo sapiens
DWBYDCTTCCGGGKY
RMCCCGGAAGHRVWH
ChIP-seq
Contrino et al.(2012)
Mv97
0.774
0.557
NR2C2
M08222_2.00
Homo sapiens
TCARAGGTCA
TGACCTYTGA
ChIP-seq
Contrino et al.(2012)
Mv98
0.774
0.557
NR2C2
M09292_2.00
Homo sapiens
RBTYMVRGGTCR
YGACCYBKRAVY
Misc
Kulakovskiy et al.(2013)
NR2C2_HUMAN.H11MO.0.B
0.774
0.557
NR2C2
M09611_2.00
Homo sapiens
RRGGTCARAGGTCA
TGACCTYTGACCYY
Misc
Heinz et al.(2010)
Hela-TR4_GSE24685
0.774
0.557
NR2C2
M11173_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NR2C2_03
0.774
0.557
NR2C2
M11174_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NR2C2_04
0.774
0.557
NR2C2
M11175_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TR4_01
0.774
0.557
NR2C2
M11176_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TR4_03
0.774
0.557
NR2C2
M11177_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TR4_Q2_01
0.774
0.557
NR2C2
M11178_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TR4_Q2
0.774
0.557
NR2C2
M11179_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TR4_Q3
0.774
0.557
NR2C2
M05670_2.00
Homo sapiens
NRGGTCRN
NYGACCYN
SELEX
Yin et al.(2017)
NR2C2_eDBD_Methyl-HT-SELEX
0.774
0.557
Nr2c2
M09303_2.00
Mus musculus
RRGKSARAGGKCA
TGMCCTYTSMCYY
Misc
Kulakovskiy et al.(2013)
NR2C2_MOUSE.H11MO.0.A
0.774
0.543
O77476_BRUPA
M02422_2.00
Brugia pahangi
NRGGTCAN
NTGACCYN
PBM
Weirauch et al.(2014)
pTH6019
0.774
0.543
NR2F6
M02396_2.00
Homo sapiens
NNRGGTCR
YGACCYNN
PBM
Weirauch et al.(2014)
pTH6747
0.753
0.543
NR2F6
M03386_2.00
Homo sapiens
RRGGTCAAAAGGTCA
TGACCTTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F6_1
0.753
0.543
NR2F6
M03387_2.00
Homo sapiens
RRGGTCAAAGGTCA
TGACCTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F6_2
0.753
0.543
NR2F6
M03388_2.00
Homo sapiens
NRGGTCAAAGGTCA
TGACCTTTGACCYN
SELEX
Jolma et al.(2013)
NR2F6_3
0.753
0.543
NR2F6
M05641_2.00
Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_HT-SELEX_1
0.753
0.543
NR2F6
M05642_2.00
Homo sapiens
RAGGTCANTGACCTY
RAGGTCANTGACCTY
SELEX
Yin et al.(2017)
NR2F6_eDBD_HT-SELEX_2
0.753
0.543
NR2F6
M05645_2.00
Homo sapiens
NRGGTCARAGGTCRN
NYGACCTYTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_HT-SELEX_1
0.753
0.543
NR2F6
M05646_2.00
Homo sapiens
NRGGTCANYGACCYY
RRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_HT-SELEX_2
0.753
0.543
NR2F6
M11153_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EAR2_Q2
0.753
0.543
NR2F6
M11154_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EAR2_Q4
0.753
0.543
NR2F6
M05643_2.00
Homo sapiens
RRGGTCAAAGGTCRN
NYGACCTTTGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_Methyl-HT-SELEX_1
0.753
0.543
NR2F6
M05644_2.00
Homo sapiens
RRGGTCRNYGACCYY
RRGGTCRNYGACCYY
SELEX
Yin et al.(2017)
NR2F6_eDBD_Methyl-HT-SELEX_2
0.753
0.543
NR2F6
M05647_2.00
Homo sapiens
NRGGTYADRGGKBRN
NYVMCCYHTRACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_Methyl-HT-SELEX_1
0.753
0.543
NR2F6
M05648_2.00
Homo sapiens
NRGGTCANYGACCYN
NRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F6_FL_Methyl-HT-SELEX_2
0.753
0.543
Nr2f2
M00184_2.00
Mus musculus
RRGGTCAN
NTGACCYY
PBM
Badis et al.(2009)
Nr2f2_2192
0.751
0.543
NR2F2
M08157_2.00
Homo sapiens
NNAAGGTCANN
NNTGACCTTNN
ChIP-seq
Mathelier et al.(2014)
MA1111.1
0.751
0.543
NR2F2
M08223_2.00
Homo sapiens
AAAGGTCA
TGACCTTT
ChIP-seq
Contrino et al.(2012)
Mv102
0.751
0.543
NR2F2
M08224_2.00
Homo sapiens
GGKCARAGGB
VCCTYTGMCC
ChIP-seq
Contrino et al.(2012)
Mv104
0.751
0.543
NR2F2
M09293_2.00
Homo sapiens
NARRGGTCADRDN
NHYHTGACCYYTN
Misc
Kulakovskiy et al.(2013)
COT2_HUMAN.H11MO.0.A
0.751
0.543
Nr2f2
M09325_2.00
Mus musculus
NNHRAGGTCANVD
HBNTGACCTYDNN
Misc
Kulakovskiy et al.(2013)
COT2_MOUSE.H11MO.0.A
0.751
0.543
NR2F2
M11180_2.00
Homo sapiens
WRRKKTCAARGGYTCA
TGARCCYTTGAMMYYW
Transfac
Matys et al.(2006)
V$ARP1_01
0.751
0.543
NR2F2
M11181_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COUPTF2_Q6
0.751
0.543
nr2f2
M02393_2.00
Danio rerio
NNRGGTCAN
NTGACCYNN
PBM
Weirauch et al.(2014)
pTH5882
0.747
0.543
Nr2f1
M00822_2.00
Mus musculus
DRGGTCRN
NYGACCYH
PBM
Weirauch et al.(2013)
pTH3811
0.747
0.543
NR2F1
M03403_2.00
Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_1
0.747
0.543
NR2F1
M03404_2.00
Homo sapiens
RRGGTCAARAGGTCAN
NTGACCTYTTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_2
0.747
0.543
NR2F1
M03405_2.00
Homo sapiens
RRGGTCAN
NTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_3
0.747
0.543
NR2F1
M03406_2.00
Homo sapiens
NHRRGGTCANVNG
CNBNTGACCYYDN
SELEX
Jolma et al.(2013)
NR2F1_4
0.747
0.543
NR2F1
M05661_2.00
Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_HT-SELEX_1
0.747
0.543
NR2F1
M05662_2.00
Homo sapiens
VRGGTCANYGACCYY
RRGGTCRNTGACCYB
SELEX
Yin et al.(2017)
NR2F1_eDBD_HT-SELEX_2
0.747
0.543
NR2F1
M05665_2.00
Homo sapiens
VRGGTCAAAGGTCAN
NTGACCTTTGACCYB
SELEX
Yin et al.(2017)
NR2F1_FL_HT-SELEX_1
0.747
0.543
NR2F1
M05666_2.00
Homo sapiens
RRGGTCANYGACCYY
RRGGTCRNTGACCYY
SELEX
Yin et al.(2017)
NR2F1_FL_HT-SELEX_2
0.747
0.543
NR2F1
M09291_2.00
Homo sapiens
NRRRBSRRRGGKCANVN
NBNTGMCCYYYSVYYYN
Misc
Kulakovskiy et al.(2013)
COT1_HUMAN.H11MO.0.C
0.747
0.543
Nr2f1
M09334_2.00
Mus musculus
YARAGGTCA
TGACCTYTR
Misc
Kulakovskiy et al.(2013)
COT1_MOUSE.H11MO.0.B
0.747
0.543
NR2F1
M11172_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COUPTF1_Q6_01
0.747
0.543
NR2F1
M05663_2.00
Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_Methyl-HT-SELEX_1
0.747
0.543
NR2F1
M05664_2.00
Homo sapiens
NRGGTCANYGACCYH
DRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_Methyl-HT-SELEX_2
0.747
0.543
NR2F1
M05667_2.00
Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_FL_Methyl-HT-SELEX_1
0.747
0.543
NR2F1
M05668_2.00
Homo sapiens
RRGGTCRNYGACCYY
RRGGTCRNYGACCYY
SELEX
Yin et al.(2017)
NR2F1_FL_Methyl-HT-SELEX_2
0.747
0.543
Pparg
M05884_2.00
Mus musculus
HWNTRGGKYANB
VNTRMCCYANWD
SMiLE-seq
Isakova et al.(2017)
PPARg
0.747
0.629
PPARG
M02707_2.00
Homo sapiens
STRGGTCANNDTGACCYANW
WNTRGGTCAHNNTGACCYAS
SELEX
Mathelier et al.(2014)
MA0066.1
0.747
0.629
PPARG
M09278_2.00
Homo sapiens
VWSKRGGKSARAGGKSA
TSMCCTYTSMCCYMSWB
Misc
Kulakovskiy et al.(2013)
PPARG_HUMAN.H11MO.0.A
0.747
0.629
Pparg
M09299_2.00
Mus musculus
HWBTRGGBSARAGGKNA
TNMCCTYTSVCCYAVWD
Misc
Kulakovskiy et al.(2013)
PPARG_MOUSE.H11MO.0.A
0.747
0.629
Pparg
M09612_2.00
Mus musculus
TRGGNCARAGGKCA
TGMCCTYTGNCCYA
Misc
Heinz et al.(2010)
3T3L1-Pparg_GSE13511
0.747
0.629
PPARG
M11138_2.00
Homo sapiens
NNDRRGGTCAAAGGTCAHVND
HNBDTGACCTTTGACCYYHNN
Transfac
Matys et al.(2006)
V$PPARG_01
0.747
0.629
PPARG
M11139_2.00
Homo sapiens
AWBTRGGTCACNDTGACCTASTT
AASTAGGTCAHNGTGACCYAVWT
Transfac
Matys et al.(2006)
V$PPARG_02
0.747
0.629
PPARG
M11140_2.00
Homo sapiens
WWBHRGGNYAAAGKTCA
TGAMCTTTRNCCYDVWW
Transfac
Matys et al.(2006)
V$PPARG_03
0.747
0.629
PPARG
M11141_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PPARG_Q6
0.747
0.629
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSDARP00000040467
Nuclear receptor
126
196
LLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNETCTIMRINRNRCQQCRFKKCLSVGMSR
ENSDARP00000104933
Nuclear receptor
126
196
LLCKVCGDVASGFHYGVHACEGCKGFFRRSIQQNIQYKKCLKNETCTIMRINRNRCQQCRFKKCLSVGMSR
Links
Other
Nuclear receptor
family TFs
Other
Danio rerio
TFs
1443 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy