CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSPMAG00000000046
(
Petromyzon marinus
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00105 (zf-C4)
IPR001628
ENSPMAG00000000046
T304484_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
nr2f2
M02393_2.00
Danio rerio
NNRGGTCAN
NTGACCYNN
PBM
Weirauch et al.(2014)
pTH5882
0.354
1.000
Nr2f1
M00822_2.00
Mus musculus
DRGGTCRN
NYGACCYH
PBM
Weirauch et al.(2013)
pTH3811
0.354
1.000
NR2F1
M03403_2.00
Homo sapiens
RRGGTCAAAGGTCAN
NTGACCTTTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_1
0.354
1.000
NR2F1
M03404_2.00
Homo sapiens
RRGGTCAARAGGTCAN
NTGACCTYTTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_2
0.354
1.000
NR2F1
M03405_2.00
Homo sapiens
RRGGTCAN
NTGACCYY
SELEX
Jolma et al.(2013)
NR2F1_3
0.354
1.000
NR2F1
M03406_2.00
Homo sapiens
NHRRGGTCANVNG
CNBNTGACCYYDN
SELEX
Jolma et al.(2013)
NR2F1_4
0.354
1.000
NR2F1
M05661_2.00
Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_HT-SELEX_1
0.354
1.000
NR2F1
M05662_2.00
Homo sapiens
VRGGTCANYGACCYY
RRGGTCRNTGACCYB
SELEX
Yin et al.(2017)
NR2F1_eDBD_HT-SELEX_2
0.354
1.000
NR2F1
M05665_2.00
Homo sapiens
VRGGTCAAAGGTCAN
NTGACCTTTGACCYB
SELEX
Yin et al.(2017)
NR2F1_FL_HT-SELEX_1
0.354
1.000
NR2F1
M05666_2.00
Homo sapiens
RRGGTCANYGACCYY
RRGGTCRNTGACCYY
SELEX
Yin et al.(2017)
NR2F1_FL_HT-SELEX_2
0.354
1.000
NR2F1
M09291_2.00
Homo sapiens
NRRRBSRRRGGKCANVN
NBNTGMCCYYYSVYYYN
Misc
Kulakovskiy et al.(2013)
COT1_HUMAN.H11MO.0.C
0.354
1.000
Nr2f1
M09334_2.00
Mus musculus
YARAGGTCA
TGACCTYTR
Misc
Kulakovskiy et al.(2013)
COT1_MOUSE.H11MO.0.B
0.354
1.000
NR2F1
M11172_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$COUPTF1_Q6_01
0.354
1.000
NR2F1
M05663_2.00
Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_Methyl-HT-SELEX_1
0.354
1.000
NR2F1
M05664_2.00
Homo sapiens
NRGGTCANYGACCYH
DRGGTCRNTGACCYN
SELEX
Yin et al.(2017)
NR2F1_eDBD_Methyl-HT-SELEX_2
0.354
1.000
NR2F1
M05667_2.00
Homo sapiens
NRGGTCAAAGGTCRN
NYGACCTTTGACCYN
SELEX
Yin et al.(2017)
NR2F1_FL_Methyl-HT-SELEX_1
0.354
1.000
NR2F1
M05668_2.00
Homo sapiens
RRGGTCRNYGACCYY
RRGGTCRNYGACCYY
SELEX
Yin et al.(2017)
NR2F1_FL_Methyl-HT-SELEX_2
0.354
1.000
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPMAP00000000048
Nuclear receptor
1
42
RSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRR
Links
Other
Nuclear receptor
family TFs
Other
Petromyzon marinus
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Alligator_sinensis_CCG014883.1
Alligator sinensis
Alligator_sinensis_CCG014883.1
I
0.354
Cmyd_10015288
Chelonia mydas
Cmyd_10015288
I
0.354
nr2f2
Takifugu rubripes
ENSTRUG00000007742
I
0.354
ENSONIG00000003070
Oreochromis niloticus
ENSONIG00000003070
I
0.354
NR2F1
Bos taurus
ENSBTAG00000017599
I
0.354
NR2F1
Callithrix jacchus
ENSCJAG00000010492
I
0.354
NR2F1
Anolis carolinensis
ENSACAG00000013324
I
0.354