|
ENSP00000280696-D1
(Bos grunniens)
Nuclear receptor
|
TF Information |
Pfam ID |
Interpro ID |
Gene ID |
CIS-BP ID |
Sequence source |
PF00105 (zf-C4) |
IPR001628 |
ENSP00000280696-D1 |
T306688_2.00 |
GigaDB (2015-Oct-22) |
NCBI Gene Info:This gene encodes a tumor suppressor protein containing transcriptional activation, DNA binding, and oligomerization domains. The encoded protein responds to diverse cellular stresses to regulate expression of target genes, thereby inducing cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism. Mutations in this gene are associated with a variety of human cancers, including hereditary cancers such as Li-Fraumeni syndrome. Alternative splicing of this gene and the use of alternate promoters result in multiple transcript variants and isoforms. Additional isoforms have also been shown to result from the use of alternate translation initiation codons from identical transcript variants (PMIDs: 12032546, 20937277). [provided by RefSeq, Dec 2016] |
Directly determined binding motifs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
No direct experiments |
|
|
|
|
|
Motifs from related TFs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
THRB
M03379_2.00 |
Homo sapiens |
DTGACCTBATVAGGTCAN |
NTGACCTBATVAGGTCAH |
SELEX
Jolma et al.(2013)
THRB_1
|
0.993
|
1.000
|
THRB
M03380_2.00 |
Homo sapiens |
DTGACCTBANTRAGGTCAH |
DTGACCTYANTVAGGTCAH |
SELEX
Jolma et al.(2013)
THRB_2
|
0.993
|
1.000
|
THRB
M03381_2.00 |
Homo sapiens |
NTGWCCTYADNTRAGGTCAH |
DTGACCTYANHTRAGGWCAN |
SELEX
Jolma et al.(2013)
THRB_3
|
0.993
|
1.000
|
THRB
M05629_2.00 |
Homo sapiens |
NRGGTCAAAGGTCRN |
NYGACCTTTGACCYN |
SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_1
|
0.993
|
1.000
|
THRB
M05630_2.00 |
Homo sapiens |
NRRGGTCAYGACCYYN |
NRRGGTCRTGACCYYN |
SELEX
Yin et al.(2017)
THRB_eDBD_HT-SELEX_2
|
0.993
|
1.000
|
THRB
M05633_2.00 |
Homo sapiens |
NTGWCCTBRNYVAGGWCAN |
NTGWCCTBRNYVAGGWCAN |
SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_1
|
0.993
|
1.000
|
THRB
M05634_2.00 |
Homo sapiens |
TRAGGTCABVYVAGGTCAH |
DTGACCTBRBVTGACCTYA |
SELEX
Yin et al.(2017)
THRB_FL_HT-SELEX_2
|
0.993
|
1.000
|
THRB
M09285_2.00 |
Homo sapiens |
VRVSYVABVKSAGGWCA |
TGWCCTSMBVTBRSBYB |
Misc
Kulakovskiy et al.(2013)
THB_HUMAN.H11MO.0.C
|
0.993
|
1.000
|
THRB
M11150_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$T3RBETA_Q6_01
|
0.993
|
1.000
|
THRB
M05631_2.00 |
Homo sapiens |
NRGGTYRDRGGKYRN |
NYRMCCYHYRACCYN |
SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_1
|
0.993
|
1.000
|
THRB
M05632_2.00 |
Homo sapiens |
NNRGGTCAYGACCYBN |
NVRGGTCRTGACCYNN |
SELEX
Yin et al.(2017)
THRB_eDBD_Methyl-HT-SELEX_2
|
0.993
|
1.000
|
THRB
M05635_2.00 |
Homo sapiens |
NTGWCCTBRNYVAGGWCAN |
NTGWCCTBRNYVAGGWCAN |
SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_1
|
0.993
|
1.000
|
THRB
M05636_2.00 |
Homo sapiens |
YRAGGWCAYGYRAGGWCAH |
DTGWCCTYRCRTGWCCTYR |
SELEX
Yin et al.(2017)
THRB_FL_Methyl-HT-SELEX_2
|
0.993
|
1.000
|
GAG_AVIER
M11193_2.00 |
Avian erythroblastosis virus |
VHNTRAGGTCACSSNN |
NNSSGTGACCTYANDB |
Transfac
Matys et al.(2006)
V$T3R_01
|
0.987
|
0.871
|
THRA
M03368_2.00 |
Homo sapiens |
DTGACCTYATVAGGTCAH |
DTGACCTBATRAGGTCAH |
SELEX
Jolma et al.(2013)
THRA_1
|
0.986
|
0.886
|
THRA
M09275_2.00 |
Homo sapiens |
RGKWSDNNYVAGGWSAN |
NTSWCCTBRNNHSWMCY |
Misc
Kulakovskiy et al.(2013)
THA_HUMAN.H11MO.0.C
|
0.986
|
0.886
|
Thra
M09333_2.00 |
Mus musculus |
VRGGKCANNYVRGGHCA |
TGDCCYBRNNTGMCCYB |
Misc
Kulakovskiy et al.(2013)
THA_MOUSE.H11MO.0.C
|
0.986
|
0.886
|
Thra
M09619_2.00 |
Mus musculus |
GGKCANNYVRGGHCA |
TGDCCYBRNNTGMCC |
Misc
Heinz et al.(2010)
C17.2-THRa_GSE38347
|
0.986
|
0.886
|
THRA
M11135_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$T3RALPHA_Q6
|
0.986
|
0.886
|
Q95WG3_ACRMI
M02424_2.00 |
Acropora millepora |
NRAGGTCAN |
NTGACCTYN |
PBM
Weirauch et al.(2014)
pTH6144
|
0.935
|
0.600
|
Hr4
M06435_2.00 |
Drosophila melanogaster |
AAGGTCA |
TGACCTT |
B1H
Zhu et al.(2011)
Hr4_SANGER_5_FBgn0023546
|
0.926
|
0.586
|
Nr2f6
M00811_2.00 |
Mus musculus |
NRRGGTCANN |
NNTGACCYYN |
PBM
Weirauch et al.(2013)
pTH2193
|
0.877
|
0.586
|
Nr2f6
M03419_2.00 |
Mus musculus |
RAGGTCAADAGGTCA |
TGACCTHTTGACCTY |
SELEX
Jolma et al.(2013)
Nr2f6_1
|
0.877
|
0.586
|
Nr2f6
M03420_2.00 |
Mus musculus |
RRGGTCAAAGGTCA |
TGACCTTTGACCYY |
SELEX
Jolma et al.(2013)
Nr2f6_2
|
0.877
|
0.586
|
Nr2f2
M00184_2.00 |
Mus musculus |
RRGGTCAN |
NTGACCYY |
PBM
Badis et al.(2009)
Nr2f2_2192
|
0.810
|
0.557
|
NR2F2
M08157_2.00 |
Homo sapiens |
NNAAGGTCANN |
NNTGACCTTNN |
ChIP-seq
Mathelier et al.(2014)
MA1111.1
|
0.810
|
0.557
|
NR2F2
M08223_2.00 |
Homo sapiens |
AAAGGTCA |
TGACCTTT |
ChIP-seq
Contrino et al.(2012)
Mv102
|
0.810
|
0.557
|
NR2F2
M08224_2.00 |
Homo sapiens |
GGKCARAGGB |
VCCTYTGMCC |
ChIP-seq
Contrino et al.(2012)
Mv104
|
0.810
|
0.557
|
NR2F2
M09293_2.00 |
Homo sapiens |
NARRGGTCADRDN |
NHYHTGACCYYTN |
Misc
Kulakovskiy et al.(2013)
COT2_HUMAN.H11MO.0.A
|
0.810
|
0.557
|
Nr2f2
M09325_2.00 |
Mus musculus |
NNHRAGGTCANVD |
HBNTGACCTYDNN |
Misc
Kulakovskiy et al.(2013)
COT2_MOUSE.H11MO.0.A
|
0.810
|
0.557
|
NR2F2
M11180_2.00 |
Homo sapiens |
WRRKKTCAARGGYTCA |
TGARCCYTTGAMMYYW |
Transfac
Matys et al.(2006)
V$ARP1_01
|
0.810
|
0.557
|
NR2F2
M11181_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$COUPTF2_Q6
|
0.810
|
0.557
|
NR2F6
M02396_2.00 |
Homo sapiens |
NNRGGTCR |
YGACCYNN |
PBM
Weirauch et al.(2014)
pTH6747
|
0.809
|
0.571
|
NR2F6
M03386_2.00 |
Homo sapiens |
RRGGTCAAAAGGTCA |
TGACCTTTTGACCYY |
SELEX
Jolma et al.(2013)
NR2F6_1
|
0.809
|
0.571
|
NR2F6
M03387_2.00 |
Homo sapiens |
RRGGTCAAAGGTCA |
TGACCTTTGACCYY |
SELEX
Jolma et al.(2013)
NR2F6_2
|
0.809
|
0.571
|
NR2F6
M03388_2.00 |
Homo sapiens |
NRGGTCAAAGGTCA |
TGACCTTTGACCYN |
SELEX
Jolma et al.(2013)
NR2F6_3
|
0.809
|
0.571
|
NR2F6
M05641_2.00 |
Homo sapiens |
RRGGTCAAAGGTCAN |
NTGACCTTTGACCYY |
SELEX
Yin et al.(2017)
NR2F6_eDBD_HT-SELEX_1
|
0.809
|
0.571
|
NR2F6
M05642_2.00 |
Homo sapiens |
RAGGTCANTGACCTY |
RAGGTCANTGACCTY |
SELEX
Yin et al.(2017)
NR2F6_eDBD_HT-SELEX_2
|
0.809
|
0.571
|
NR2F6
M05645_2.00 |
Homo sapiens |
NRGGTCARAGGTCRN |
NYGACCTYTGACCYN |
SELEX
Yin et al.(2017)
NR2F6_FL_HT-SELEX_1
|
0.809
|
0.571
|
NR2F6
M05646_2.00 |
Homo sapiens |
NRGGTCANYGACCYY |
RRGGTCRNTGACCYN |
SELEX
Yin et al.(2017)
NR2F6_FL_HT-SELEX_2
|
0.809
|
0.571
|
NR2F6
M11153_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$EAR2_Q2
|
0.809
|
0.571
|
NR2F6
M11154_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$EAR2_Q4
|
0.809
|
0.571
|
NR2F6
M05643_2.00 |
Homo sapiens |
RRGGTCAAAGGTCRN |
NYGACCTTTGACCYY |
SELEX
Yin et al.(2017)
NR2F6_eDBD_Methyl-HT-SELEX_1
|
0.809
|
0.571
|
NR2F6
M05644_2.00 |
Homo sapiens |
RRGGTCRNYGACCYY |
RRGGTCRNYGACCYY |
SELEX
Yin et al.(2017)
NR2F6_eDBD_Methyl-HT-SELEX_2
|
0.809
|
0.571
|
NR2F6
M05647_2.00 |
Homo sapiens |
NRGGTYADRGGKBRN |
NYVMCCYHTRACCYN |
SELEX
Yin et al.(2017)
NR2F6_FL_Methyl-HT-SELEX_1
|
0.809
|
0.571
|
NR2F6
M05648_2.00 |
Homo sapiens |
NRGGTCANYGACCYN |
NRGGTCRNTGACCYN |
SELEX
Yin et al.(2017)
NR2F6_FL_Methyl-HT-SELEX_2
|
0.809
|
0.571
|
nr2f2
M02393_2.00 |
Danio rerio |
NNRGGTCAN |
NTGACCYNN |
PBM
Weirauch et al.(2014)
pTH5882
|
0.807
|
0.557
|
Nr2f1
M00822_2.00 |
Mus musculus |
DRGGTCRN |
NYGACCYH |
PBM
Weirauch et al.(2013)
pTH3811
|
0.807
|
0.557
|
NR2F1
M03403_2.00 |
Homo sapiens |
RRGGTCAAAGGTCAN |
NTGACCTTTGACCYY |
SELEX
Jolma et al.(2013)
NR2F1_1
|
0.807
|
0.557
|
NR2F1
M03404_2.00 |
Homo sapiens |
RRGGTCAARAGGTCAN |
NTGACCTYTTGACCYY |
SELEX
Jolma et al.(2013)
NR2F1_2
|
0.807
|
0.557
|
NR2F1
M03405_2.00 |
Homo sapiens |
RRGGTCAN |
NTGACCYY |
SELEX
Jolma et al.(2013)
NR2F1_3
|
0.807
|
0.557
|
NR2F1
M03406_2.00 |
Homo sapiens |
NHRRGGTCANVNG |
CNBNTGACCYYDN |
SELEX
Jolma et al.(2013)
NR2F1_4
|
0.807
|
0.557
|
NR2F1
M05661_2.00 |
Homo sapiens |
NRGGTCAAAGGTCRN |
NYGACCTTTGACCYN |
SELEX
Yin et al.(2017)
NR2F1_eDBD_HT-SELEX_1
|
0.807
|
0.557
|
NR2F1
M05662_2.00 |
Homo sapiens |
VRGGTCANYGACCYY |
RRGGTCRNTGACCYB |
SELEX
Yin et al.(2017)
NR2F1_eDBD_HT-SELEX_2
|
0.807
|
0.557
|
NR2F1
M05665_2.00 |
Homo sapiens |
VRGGTCAAAGGTCAN |
NTGACCTTTGACCYB |
SELEX
Yin et al.(2017)
NR2F1_FL_HT-SELEX_1
|
0.807
|
0.557
|
NR2F1
M05666_2.00 |
Homo sapiens |
RRGGTCANYGACCYY |
RRGGTCRNTGACCYY |
SELEX
Yin et al.(2017)
NR2F1_FL_HT-SELEX_2
|
0.807
|
0.557
|
NR2F1
M09291_2.00 |
Homo sapiens |
NRRRBSRRRGGKCANVN |
NBNTGMCCYYYSVYYYN |
Misc
Kulakovskiy et al.(2013)
COT1_HUMAN.H11MO.0.C
|
0.807
|
0.557
|
Nr2f1
M09334_2.00 |
Mus musculus |
YARAGGTCA |
TGACCTYTR |
Misc
Kulakovskiy et al.(2013)
COT1_MOUSE.H11MO.0.B
|
0.807
|
0.557
|
NR2F1
M11172_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$COUPTF1_Q6_01
|
0.807
|
0.557
|
NR2F1
M05663_2.00 |
Homo sapiens |
NRGGTCAAAGGTCRN |
NYGACCTTTGACCYN |
SELEX
Yin et al.(2017)
NR2F1_eDBD_Methyl-HT-SELEX_1
|
0.807
|
0.557
|
NR2F1
M05664_2.00 |
Homo sapiens |
NRGGTCANYGACCYH |
DRGGTCRNTGACCYN |
SELEX
Yin et al.(2017)
NR2F1_eDBD_Methyl-HT-SELEX_2
|
0.807
|
0.557
|
NR2F1
M05667_2.00 |
Homo sapiens |
NRGGTCAAAGGTCRN |
NYGACCTTTGACCYN |
SELEX
Yin et al.(2017)
NR2F1_FL_Methyl-HT-SELEX_1
|
0.807
|
0.557
|
NR2F1
M05668_2.00 |
Homo sapiens |
RRGGTCRNYGACCYY |
RRGGTCRNYGACCYY |
SELEX
Yin et al.(2017)
NR2F1_FL_Methyl-HT-SELEX_2
|
0.807
|
0.557
|
Rorc
M09324_2.00 |
Mus musculus |
NDAWSTRRGTCA |
TGACYYASWTHN |
Misc
Kulakovskiy et al.(2013)
RORG_MOUSE.H11MO.0.B
|
0.806
|
0.543
|
Rorc
M09617_2.00 |
Mus musculus |
AWBTRGGTCA |
TGACCYAVWT |
Misc
Heinz et al.(2010)
EL4-RORgt.Flag_GSE56019
|
0.806
|
0.543
|
nr1h5.S
M11194_2.00 |
Xenopus laevis |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$FXRIR1_Q6
|
0.804
|
0.657
|
ENSPMAG00000000180
M02403_2.00 |
Petromyzon marinus |
RGKWCRN |
NYGWMCY |
PBM
Weirauch et al.(2014)
pTH5509
|
0.799
|
0.543
|
svp
M06423_2.00 |
Drosophila melanogaster |
ARGGTCA |
TGACCYK |
B1H
Zhu et al.(2011)
svp_SANGER_5_FBgn0003651
|
0.798
|
0.557
|
Rorb
M00820_2.00 |
Mus musculus |
NRGGTCANN |
NNTGACCYN |
PBM
Weirauch et al.(2013)
pTH3469
|
0.796
|
0.543
|
rorb
M02404_2.00 |
Tetraodon nigroviridis |
NGAGGTCANN |
NNTGACCTCN |
PBM
Weirauch et al.(2014)
pTH6589
|
0.796
|
0.543
|
RORB
M05677_2.00 |
Homo sapiens |
DAWNTRGGTYAGTRGGTCAN |
NTGACCYACTRACCYANWTH |
SELEX
Yin et al.(2017)
RORB_eDBD_HT-SELEX_1
|
0.796
|
0.543
|
RORB
M05678_2.00 |
Homo sapiens |
NAWNKRGGTCAYGACCYMNWTN |
NAWNKRGGTCRTGACCYMNWTN |
SELEX
Yin et al.(2017)
RORB_eDBD_HT-SELEX_2
|
0.796
|
0.543
|
RORB
M05883_2.00 |
Homo sapiens |
AWNBRGGTCAN |
NTGACCYVNWT |
SMiLE-seq
Isakova et al.(2017)
RORb
|
0.796
|
0.543
|
RORB
M11187_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$RORBETA_Q2
|
0.796
|
0.543
|
RORB
M05679_2.00 |
Homo sapiens |
DAWBTRGGTYAGTRGGTCRN |
NYGACCYACTRACCYAVWTH |
SELEX
Yin et al.(2017)
RORB_eDBD_Methyl-HT-SELEX_1
|
0.796
|
0.543
|
RORB
M05680_2.00 |
Homo sapiens |
NAWNKRGGTCAYGACCYMNWTN |
NAWNKRGGTCRTGACCYMNWTN |
SELEX
Yin et al.(2017)
RORB_eDBD_Methyl-HT-SELEX_2
|
0.796
|
0.543
|
Rora
M00819_2.00 |
Mus musculus |
NNRGGTCA |
TGACCYNN |
PBM
Weirauch et al.(2013)
pTH3464
|
0.793
|
0.557
|
RORA
M03353_2.00 |
Homo sapiens |
NMRAGGTCAAVYYVAGGTCA |
TGACCTBRRBTTGACCTYKN |
SELEX
Jolma et al.(2013)
RORA_1
|
0.793
|
0.557
|
RORA
M03354_2.00 |
Homo sapiens |
WAWSTRGGTYASTAGGTCA |
TGACCTASTRACCYASWTW |
SELEX
Jolma et al.(2013)
RORA_2
|
0.793
|
0.557
|
RORA
M02705_2.00 |
Homo sapiens |
WWVDAGGTCA |
TGACCTHBWW |
SELEX
Mathelier et al.(2014)
MA0071.1
|
0.793
|
0.557
|
RORA
M02706_2.00 |
Homo sapiens |
NDWAWBTAGGTCAN |
NTGACCTAVWTWHN |
SELEX
Mathelier et al.(2014)
MA0072.1
|
0.793
|
0.557
|
RORA
M09265_2.00 |
Homo sapiens |
VWNDRGGBCARDR |
YHYTGVCCYHNWB |
Misc
Kulakovskiy et al.(2013)
RORA_HUMAN.H11MO.0.C
|
0.793
|
0.557
|
Rora
M09327_2.00 |
Mus musculus |
VWNDRGGBCARDR |
YHYTGVCCYHNWB |
Misc
Kulakovskiy et al.(2013)
RORA_MOUSE.H11MO.0.C
|
0.793
|
0.557
|
RORA
M11090_2.00 |
Homo sapiens |
DWWWVDAGGTCAH |
DTGACCTHBWWWH |
Transfac
Matys et al.(2006)
V$RORA1_01
|
0.793
|
0.557
|
RORA
M11091_2.00 |
Homo sapiens |
DWAWBTAGGTCAN |
NTGACCTAVWTWH |
Transfac
Matys et al.(2006)
V$RORA2_01
|
0.793
|
0.557
|
RORA
M11092_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$RORALPHA_Q4
|
0.793
|
0.557
|
RORA
M11093_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$RORA_Q4
|
0.793
|
0.557
|
Eip78C
M06427_2.00 |
Drosophila melanogaster |
RGGTCA |
TGACCY |
B1H
Zhu et al.(2011)
Eip78C_SANGER_5_FBgn0004865
|
0.790
|
0.586
|
EcR
M06414_2.00 |
Drosophila melanogaster |
RAGGTCAW |
WTGACCTY |
B1H
Zhu et al.(2011)
EcR_SANGER_5_FBgn0000546
|
0.776
|
0.586
|
AAEL009588
M02388_2.00 |
Aedes aegypti |
NRGGTCR |
YGACCYN |
PBM
Weirauch et al.(2014)
pTH5508
|
0.773
|
0.529
|
Hr46
M02406_2.00 |
Drosophila melanogaster |
NRGGTCAN |
NTGACCYN |
PBM
Weirauch et al.(2014)
pTH6142
|
0.773
|
0.529
|
Hr46
M03926_2.00 |
Drosophila melanogaster |
RGGTCAGTRGGTCA |
TGACCYACTGACCY |
SELEX
Nitta et al.(2015)
Hr46_1
|
0.773
|
0.529
|
Hr46
M06412_2.00 |
Drosophila melanogaster |
AWKTGGGTYW |
WRACCCAMWT |
B1H
Zhu et al.(2011)
Hr46_FlyReg_FBgn0000448
|
0.773
|
0.529
|
Hr46
M06413_2.00 |
Drosophila melanogaster |
HWNBAGGTCA |
TGACCTVNWD |
B1H
Zhu et al.(2011)
Hr46_SANGER_5_FBgn0000448
|
0.773
|
0.529
|
RORC
M02405_2.00 |
Tetraodon nigroviridis |
NGAGGTCANN |
NNTGACCTCN |
PBM
Weirauch et al.(2014)
pTH6612
|
0.770
|
0.514
|
Q969A9_BOMMO
M02410_2.00 |
Bombyx mori |
VRGGTCDN |
NHGACCYB |
PBM
Weirauch et al.(2014)
pTH5516
|
0.769
|
0.543
|
RORC
M05621_2.00 |
Homo sapiens |
KRGGTCAYGMCCYM |
KRGGKCRTGACCYM |
SELEX
Yin et al.(2017)
RORC_eDBD_HT-SELEX_1
|
0.767
|
0.529
|
RORC
M05622_2.00 |
Homo sapiens |
NAWNKRGGTYANTRGGTCAN |
NTGACCYANTRACCYMNWTN |
SELEX
Yin et al.(2017)
RORC_eDBD_HT-SELEX_2
|
0.767
|
0.529
|
RORC
M05880_2.00 |
Homo sapiens |
NDAWNTRGGKCA |
TGMCCYANWTHN |
SMiLE-seq
Isakova et al.(2017)
RORc
|
0.767
|
0.529
|
RORC
M09282_2.00 |
Homo sapiens |
NDAWSTRRGTCA |
TGACYYASWTHN |
Misc
Kulakovskiy et al.(2013)
RORG_HUMAN.H11MO.0.C
|
0.767
|
0.529
|
RORC
M05623_2.00 |
Homo sapiens |
TRGGTCAYGACCYA |
TRGGTCRTGACCYA |
SELEX
Yin et al.(2017)
RORC_eDBD_Methyl-HT-SELEX_1
|
0.767
|
0.529
|
RORC
M05624_2.00 |
Homo sapiens |
NAWNTRGGTYASTAGGTCAN |
NTGACCTASTRACCYANWTN |
SELEX
Yin et al.(2017)
RORC_eDBD_Methyl-HT-SELEX_2
|
0.767
|
0.529
|
sex-1
M02416_2.00 |
Caenorhabditis elegans |
RAGGTCAH |
DTGACCTY |
PBM
Weirauch et al.(2014)
pTH5667
|
0.763
|
0.557
|
NR1H3
M09264_2.00 |
Homo sapiens |
NHRRGGBHABHNNRGGNCA |
TGNCCYNNDVTDVCCYYDN |
Misc
Kulakovskiy et al.(2013)
NR1H3_HUMAN.H11MO.0.B
|
0.762
|
0.557
|
usp
M03934_2.00 |
Drosophila melanogaster |
ARRGGTCAAAGGTCA |
TGACCTTTGACCYYT |
SELEX
Nitta et al.(2015)
usp_1
|
0.761
|
0.529
|
usp
M06426_2.00 |
Drosophila melanogaster |
HRRGGTCAH |
DTGACCYYD |
B1H
Zhu et al.(2011)
usp_SANGER_5_FBgn0003964
|
0.761
|
0.529
|
usp
M02709_2.00 |
Drosophila melanogaster |
GGGGTCACSN |
NSGTGACCCC |
SELEX
Mathelier et al.(2014)
MA0016.1
|
0.761
|
0.529
|
usp
M09689_2.00 |
Drosophila melanogaster |
KRGGTCACG |
CGTGACCYM |
Misc
Kulakovskiy et al.(2009)
usp
|
0.761
|
0.529
|
usp
M11191_2.00 |
Drosophila melanogaster |
GRGGTCAYS |
SRTGACCYC |
Transfac
Matys et al.(2006)
I$CF1_01
|
0.761
|
0.529
|
usp
M11192_2.00 |
Drosophila melanogaster |
GGGGTCAYS |
SRTGACCCC |
Transfac
Matys et al.(2006)
I$CF1_02
|
0.761
|
0.529
|
CBG17178
M02392_2.00 |
Caenorhabditis briggsae |
RAGGTCAH |
DTGACCTY |
PBM
Weirauch et al.(2014)
pTH6634
|
0.754
|
0.543
|
PPARD
M05581_2.00 |
Homo sapiens |
NRRGGTCAAAGGTCAN |
NTGACCTTTGACCYYN |
SELEX
Yin et al.(2017)
PPARD_eDBD_HT-SELEX_1
|
0.753
|
0.543
|
PPARD
M05582_2.00 |
Homo sapiens |
HRRGGTCAYGACCYYD |
HRRGGTCRTGACCYYD |
SELEX
Yin et al.(2017)
PPARD_eDBD_HT-SELEX_2
|
0.753
|
0.543
|
PPARD
M05583_2.00 |
Homo sapiens |
NRRGGTCAAAGGTCRN |
NYGACCTTTGACCYYN |
SELEX
Yin et al.(2017)
PPARD_eDBD_Methyl-HT-SELEX_1
|
0.753
|
0.543
|
PPARD
M05584_2.00 |
Homo sapiens |
NRRGGTCRCGACCYYN |
NRRGGTCGYGACCYYN |
SELEX
Yin et al.(2017)
PPARD_eDBD_Methyl-HT-SELEX_2
|
0.753
|
0.543
|
Rxra
M00181_2.00 |
Mus musculus |
NRRGGTCANN |
NNTGACCYYN |
PBM
Badis et al.(2009)
Rxra_1035
|
0.750
|
0.500
|
RXRA
M03408_2.00 |
Homo sapiens |
RRGGTCAAAGGTCA |
TGACCTTTGACCYY |
SELEX
Jolma et al.(2013)
RXRA_1
|
0.750
|
0.500
|
RXRA
M03409_2.00 |
Homo sapiens |
RRGGTCATGACCYY |
RRGGTCATGACCYY |
SELEX
Jolma et al.(2013)
RXRA_2
|
0.750
|
0.500
|
RXRA
M03410_2.00 |
Homo sapiens |
RRGGTCAAAGGTCA |
TGACCTTTGACCYY |
SELEX
Jolma et al.(2013)
RXRA_3
|
0.750
|
0.500
|
RXRA
M03411_2.00 |
Homo sapiens |
RRGGTCATGACCYY |
RRGGTCATGACCYY |
SELEX
Jolma et al.(2013)
RXRA_4
|
0.750
|
0.500
|
Rxra
M03421_2.00 |
Mus musculus |
RRGGTCAAAGGTCA |
TGACCTTTGACCYY |
SELEX
Jolma et al.(2013)
Rxra_1
|
0.750
|
0.500
|
Rxra
M03422_2.00 |
Mus musculus |
RGGTCATGACCY |
RGGTCATGACCY |
SELEX
Jolma et al.(2013)
Rxra_2
|
0.750
|
0.500
|
RXRA
M05671_2.00 |
Homo sapiens |
RRGGTCAAAGGTCAN |
NTGACCTTTGACCYY |
SELEX
Yin et al.(2017)
RXRA_eDBD_HT-SELEX
|
0.750
|
0.500
|
RXRA
M05882_2.00 |
Homo sapiens |
VRGKTBAAAGGTYRH |
DYRACCTTTVAMCYB |
SMiLE-seq
Isakova et al.(2017)
RXRa
|
0.750
|
0.500
|
RXRA
M07993_2.00 |
Homo sapiens |
NRRGGTCA |
TGACCYYN |
ChIP-seq
Gerstein et al.(2012)
H1-hESC_RXRA_HudsonAlpha
|
0.750
|
0.500
|
RXRA
M07994_2.00 |
Homo sapiens |
DDNNMRRGGTCANDN |
NHNTGACCYYKNNHH |
ChIP-seq
Gerstein et al.(2012)
HepG2_RXRA_HudsonAlpha
|
0.750
|
0.500
|
RXRA
M09294_2.00 |
Homo sapiens |
VDDDNDNNVRRRGGKCAVDV |
BHBTGMCCYYYBNNHNHHHB |
Misc
Kulakovskiy et al.(2013)
RXRA_HUMAN.H11MO.0.A
|
0.750
|
0.500
|
Rxra
M09306_2.00 |
Mus musculus |
DDVNNNNNRAGKTCAAGGYCA |
TGRCCTTGAMCTYNNNNNBHH |
Misc
Kulakovskiy et al.(2013)
RXRA_MOUSE.H11MO.0.A
|
0.750
|
0.500
|
RXRA
M11182_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$RXRA_07
|
0.750
|
0.500
|
RXRA
M05672_2.00 |
Homo sapiens |
RRGGTCAAAGGTCAH |
DTGACCTTTGACCYY |
SELEX
Yin et al.(2017)
RXRA_eDBD_Methyl-HT-SELEX
|
0.750
|
0.500
|
Rxrg
M02400_2.00 |
Mus musculus |
VRGGTCAN |
NTGACCYB |
PBM
Weirauch et al.(2014)
pTH2880
|
0.746
|
0.514
|
RXRG
M03375_2.00 |
Homo sapiens |
RRGGTCAAAGGTCA |
TGACCTTTGACCYY |
SELEX
Jolma et al.(2013)
RXRG_1
|
0.746
|
0.514
|
RXRG
M03376_2.00 |
Homo sapiens |
RRGGTCATGACCYY |
RRGGTCATGACCYY |
SELEX
Jolma et al.(2013)
RXRG_2
|
0.746
|
0.514
|
RXRG
M03377_2.00 |
Homo sapiens |
GRGGTCAAAGGTCA |
TGACCTTTGACCYC |
SELEX
Jolma et al.(2013)
RXRG_3
|
0.746
|
0.514
|
RXRG
M03378_2.00 |
Homo sapiens |
NRGGTCATGACCYC |
GRGGTCATGACCYN |
SELEX
Jolma et al.(2013)
RXRG_4
|
0.746
|
0.514
|
RXRG
M02746_2.00 |
Homo sapiens |
GGTCAAAGGTCA |
TGACCTTTGACC |
SELEX
Jolma et al.(2010)
RXRG_dimer
|
0.746
|
0.514
|
RXRG
M05615_2.00 |
Homo sapiens |
VRGGTCAAAGGTCAN |
NTGACCTTTGACCYB |
SELEX
Yin et al.(2017)
RXRG_FL_HT-SELEX_1
|
0.746
|
0.514
|
RXRG
M05616_2.00 |
Homo sapiens |
RRGGTCAYGACCYY |
RRGGTCRTGACCYY |
SELEX
Yin et al.(2017)
RXRG_FL_HT-SELEX_2
|
0.746
|
0.514
|
RXRG
M05879_2.00 |
Homo sapiens |
RGGTBAARGGTBRND |
HNYVACCYTTVACCY |
SMiLE-seq
Isakova et al.(2017)
RXRg
|
0.746
|
0.514
|
RXRG
M09280_2.00 |
Homo sapiens |
NGTCAAAGGTCAH |
DTGACCTTTGACN |
Misc
Kulakovskiy et al.(2013)
RXRG_HUMAN.H11MO.0.B
|
0.746
|
0.514
|
Rxrg
M09305_2.00 |
Mus musculus |
VDDVDNSVNRAGKTCAAGGYCA |
TGRCCTTGAMCTYNBSNHBHHB |
Misc
Kulakovskiy et al.(2013)
RXRG_MOUSE.H11MO.0.B
|
0.746
|
0.514
|
RXRG
M05617_2.00 |
Homo sapiens |
DRGGTBAARGGTBRN |
NYVACCYTTVACCYH |
SELEX
Yin et al.(2017)
RXRG_FL_Methyl-HT-SELEX_1
|
0.746
|
0.514
|
RXRG
M05618_2.00 |
Homo sapiens |
VRGGTCAYGACCYB |
VRGGTCRTGACCYB |
SELEX
Yin et al.(2017)
RXRG_FL_Methyl-HT-SELEX_2
|
0.746
|
0.514
|
Eip75B
M03928_2.00 |
Drosophila melanogaster |
MWVTAGGTCANN |
NNTGACCTABWK |
SELEX
Nitta et al.(2015)
Eip75B_1
|
0.746
|
0.571
|
Eip75B
M03929_2.00 |
Drosophila melanogaster |
AWNTRGGTCANTRGGTCA |
TGACCYANTGACCYANWT |
SELEX
Nitta et al.(2015)
Eip75B_2
|
0.746
|
0.571
|
Eip75B
M06416_2.00 |
Drosophila melanogaster |
KWWNTRGGTCA |
TGACCYANWWM |
B1H
Zhu et al.(2011)
Eip75B_SANGER_5_FBgn0000568
|
0.746
|
0.571
|
For this family, TFs with SR scores > 0.745 will likely have a similar motif |