Pvit_13689 (Pogona vitticeps)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 Pvit_13689 T306901_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
GA30480
M02409_2.00
Drosophila pseudoobscura
RAGATCAM

KTGATCTY
PBM
Weirauch et al.(2014)
pTH5877
0.988 0.900
Hr51
M06432_2.00
Drosophila melanogaster
AMRDATCARARGW

WCYTYTGATHYKT
B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012
0.988 0.900
NR2E3
M00373_2.00
Homo sapiens
NRAGATCAMN

NKTGATCTYN
PBM
Barrera et al.(2016)
NR2E3_REF
0.977 0.886
Nr2e3
M02708_2.00
Mus musculus
AAGCTTD

HAAGCTT
SELEX
Mathelier et al.(2014)
MA0164.1
0.977 0.886
Nr2e3
M09328_2.00
Mus musculus
NAAGTCAAAARKCA

TGMYTTTTGACTTN
Misc
Kulakovskiy et al.(2013)
NR2E3_MOUSE.H11MO.0.C
0.977 0.886
NR2E3
M00372_2.00
Homo sapiens
AAAGATCA

TGATCTTT
PBM
Barrera et al.(2016)
NR2E3_R77Q
0.977 0.871
NR2E3
M00370_2.00
Homo sapiens
NNNWRABATCANN

NNTGATVTYWNNN
PBM
Barrera et al.(2016)
NR2E3_R76Q
0.974 0.871
NR2E3
M00371_2.00
Homo sapiens
NNNHAATWTRTNN

NNAYAWATTDNNN
PBM
Barrera et al.(2016)
NR2E3_R76W
0.969 0.871
NR2E3
M00369_2.00
Homo sapiens
NGGGRTCAHN

NDTGAYCCCN
PBM
Barrera et al.(2016)
NR2E3_G56R
0.964 0.871
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pvit_13689 Nuclear receptor 27 97

Links

Other Nuclear receptor family TFs
Other Pogona vitticeps TFs

196 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00022p00198330 Amborella trichopoda AMTR_s00022p00198330 I 0.000
orange1.1g046416m.g Citrus sinensis orange1.1g046416m.g I 0.000
gene22660-v1.0-hybrid Fragaria vesca gene22660-v1.0-hybrid I 0.000
Ciclev10011938m.g Citrus clementina Ciclev10011938m.g I 0.000
mgf012995m Mimulus guttatus mgf012995m I 0.000
Cucsa.242790 Cucumis sativus Cucsa.242790 I 0.000
29269.m000250 Ricinus communis 29269.m000250 I 0.000
Pm002693 Prunus mume Pm002693 I 0.000
Traes_5BL_96D5EA4EE Triticum aestivum Traes_5BL_96D5EA4EE I 0.000
TCM_024873 Theobroma cacao TCM_024873 I 0.000
PRUPE_ppa007056mg Prunus persica PRUPE_ppa007056mg I 0.000
GSMUA_Achr7G02020_001 Musa acuminata GSMUA_Achr7G02020_001 I 0.000
GLYMA03G29901 Glycine max GLYMA03G29901 I 0.000
BRADI4G33770 Brachypodium distachyon BRADI4G33770 I 0.000
PK18312.1 Cannabis sativa PK18312.1 I 0.000