HHAL000201-PA (Halyomorpha halys)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 HHAL000201-PA T307098_2.00 Misc (2018-Jan-19)
NCBI Gene Info:
This gene encodes a tumor suppressor protein containing transcriptional activation, DNA binding, and oligomerization domains. The encoded protein responds to diverse cellular stresses to regulate expression of target genes, thereby inducing cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism. Mutations in this gene are associated with a variety of human cancers, including hereditary cancers such as Li-Fraumeni syndrome. Alternative splicing of this gene and the use of alternate promoters result in multiple transcript variants and isoforms. Additional isoforms have also been shown to result from the use of alternate translation initiation codons from identical transcript variants (PMIDs: 12032546, 20937277). [provided by RefSeq, Dec 2016]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Hr96
M03940_2.00
Drosophila melanogaster
YVRGTRCANVTGYACYBR

YVRGTRCABNTGYACYBR
SELEX
Nitta et al.(2015)
Hr96_1
0.961 0.714
daf-12
M00685_2.00
Caenorhabditis elegans
NDAGTRCANN

NNTGYACTHN
PBM
Narasimhan et al.(2015)
pTH9108
0.890 0.729
daf-12
M08159_2.00
Caenorhabditis elegans
GWGYGYGYKTGYDKB

VMHRCAMRCRCRCWC
ChIP-seq
Mathelier et al.(2014)
MA0538.1
0.890 0.729
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
HHAL000201-PA Nuclear receptor 13 82

Links

Other Nuclear receptor family TFs
Other Halyomorpha halys TFs

156 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Ca_16043 Cicer arietinum Ca_16043 N 0.000
Ciclev10025246m.g Citrus clementina Ciclev10025246m.g N 0.000
gene29558-v1.0-hybrid Fragaria vesca gene29558-v1.0-hybrid N 0.000
GLYMA01G38360 Glycine max GLYMA01G38360 N 0.000
GLYMA02G06530 Glycine max GLYMA02G06530 N 0.000
GLYMA11G06980 Glycine max GLYMA11G06980 N 0.000
GLYMA16G25570 Glycine max GLYMA16G25570 N 0.000
Gorai.003G016500 Gossypium raimondii Gorai.003G016500 N 0.000
LjSGA_023918.1 Lotus japonicus LjSGA_023918.1 N 0.000
Lus10024029.g Linum usitatissimum Lus10024029.g N 0.000
Lus10041721.g Linum usitatissimum Lus10041721.g N 0.000
MDP0000139971 Malus domestica MDP0000139971 N 0.000
MTR_8g077940 Medicago truncatula MTR_8g077940 N 0.000
orange1.1g048701m.g Citrus sinensis orange1.1g048701m.g N 0.000
Pm026588 Prunus mume Pm026588 N 0.000
POPTR_0005s12730 Populus trichocarpa POPTR_0005s12730 N 0.000
POPTR_0007s12480 Populus trichocarpa POPTR_0007s12480 N 0.000
SapurV1A.0255s0090 Salix purpurea SapurV1A.0255s0090 N 0.000
SapurV1A.0817s0080 Salix purpurea SapurV1A.0817s0080 N 0.000
TCM_000435 Theobroma cacao TCM_000435 N 0.000
VIT_04s0023g01380 Vitis vinifera VIT_04s0023g01380 N 0.000