|
HHAL007294-PA
(Halyomorpha halys)
Nuclear receptor
|
TF Information |
Pfam ID |
Interpro ID |
Gene ID |
CIS-BP ID |
Sequence source |
PF00105 (zf-C4) |
IPR001628 |
HHAL007294-PA |
T307107_2.00 |
Misc (2018-Jan-19) |
NCBI Gene Info:This gene encodes a tumor suppressor protein containing transcriptional activation, DNA binding, and oligomerization domains. The encoded protein responds to diverse cellular stresses to regulate expression of target genes, thereby inducing cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism. Mutations in this gene are associated with a variety of human cancers, including hereditary cancers such as Li-Fraumeni syndrome. Alternative splicing of this gene and the use of alternate promoters result in multiple transcript variants and isoforms. Additional isoforms have also been shown to result from the use of alternate translation initiation codons from identical transcript variants (PMIDs: 12032546, 20937277). [provided by RefSeq, Dec 2016] |
Directly determined binding motifs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
No direct experiments |
|
|
|
|
|
Motifs from related TFs |
Name/Motif ID |
Species |
Forward |
Reverse |
Type/Study/Study ID |
SR Score |
DBD Identity |
tll
M02408_2.00 |
Drosophila melanogaster |
NRASGTCAANNN |
NNNTTGACSTYN |
PBM
Weirauch et al.(2014)
pTH5714
|
0.989
|
0.829
|
tll
M03932_2.00 |
Drosophila melanogaster |
NRAGTCAAAAGTCA |
TGACTTTTGACTYN |
SELEX
Nitta et al.(2015)
tll_1
|
0.989
|
0.829
|
tll
M03933_2.00 |
Drosophila melanogaster |
NRAGTCAADAAGTCA |
TGACTTHTTGACTYN |
SELEX
Nitta et al.(2015)
tll_2
|
0.989
|
0.829
|
tll
M06558_2.00 |
Drosophila melanogaster |
WAAAGTCAAM |
KTTGACTTTW |
B1H
Mathelier et al.(2014)
MA0459.1
|
0.989
|
0.829
|
tll
M06424_2.00 |
Drosophila melanogaster |
AAAGTYA |
TRACTTT |
B1H
Zhu et al.(2011)
tll_FlyReg_FBgn0003720
|
0.989
|
0.829
|
tll
M06425_2.00 |
Drosophila melanogaster |
WAAAGTCAAM |
KTTGACTTTW |
B1H
Zhu et al.(2011)
tll_NAR_FBgn0003720
|
0.989
|
0.829
|
tll
M09688_2.00 |
Drosophila melanogaster |
MAAAGTCAAH |
DTTGACTTTK |
Misc
Kulakovskiy et al.(2009)
tll
|
0.989
|
0.829
|
tll
M11190_2.00 |
Drosophila melanogaster |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
I$TLL_Q6
|
0.989
|
0.829
|
NR2E1
M02394_2.00 |
Homo sapiens |
NGAGGTCARN |
NYTGACCTCN |
PBM
Weirauch et al.(2014)
pTH6281
|
0.922
|
0.786
|
Nr2e1
M00814_2.00 |
Mus musculus |
NNNGTYRNNN |
NNNYRACNNN |
PBM
Weirauch et al.(2013)
pTH2936
|
0.922
|
0.786
|
A1YGC6_PANPA
M02421_2.00 |
Pan paniscus |
NNGTCANNN |
NNNTGACNN |
PBM
Weirauch et al.(2014)
pTH5561
|
0.922
|
0.786
|
NR2E1
M03364_2.00 |
Homo sapiens |
WDAAGTCAA |
TTGACTTHW |
SELEX
Jolma et al.(2013)
NR2E1_1
|
0.922
|
0.786
|
NR2E1
M03365_2.00 |
Homo sapiens |
RARTCAWDAAGTCA |
TGACTTHWTGAYTY |
SELEX
Jolma et al.(2013)
NR2E1_2
|
0.922
|
0.786
|
Nr2e1
M03427_2.00 |
Mus musculus |
WDAAGTCAW |
WTGACTTHW |
SELEX
Jolma et al.(2013)
Nr2e1_1
|
0.922
|
0.786
|
Nr2e1
M03428_2.00 |
Mus musculus |
RRGTCAWDAAGTCA |
TGACTTHWTGACYY |
SELEX
Jolma et al.(2013)
Nr2e1_2
|
0.922
|
0.786
|
NR2E1
M05585_2.00 |
Homo sapiens |
NNAAGTCAN |
NTGACTTNN |
SELEX
Yin et al.(2017)
NR2E1_FL_HT-SELEX
|
0.922
|
0.786
|
NR2E1
M05586_2.00 |
Homo sapiens |
NDAAGTCAN |
NTGACTTHN |
SELEX
Yin et al.(2017)
NR2E1_FL_Methyl-HT-SELEX
|
0.922
|
0.786
|
dsf
M06431_2.00 |
Drosophila melanogaster |
AAAAGTCANH |
DNTGACTTTT |
B1H
Zhu et al.(2011)
dsf_SANGER_5_FBgn0015381
|
0.900
|
0.757
|
Hnf4
M03935_2.00 |
Drosophila melanogaster |
RGGKCAAAGGTCA |
TGACCTTTGMCCY |
SELEX
Nitta et al.(2015)
Hnf4_1
|
0.774
|
0.586
|
Hnf4
M03936_2.00 |
Drosophila melanogaster |
RGGKCAAAGTYCA |
TGRACTTTGMCCY |
SELEX
Nitta et al.(2015)
Hnf4_2
|
0.774
|
0.586
|
Hnf4
M03937_2.00 |
Drosophila melanogaster |
RGTVCAAAGKTCR |
YGAMCTTTGBACY |
SELEX
Nitta et al.(2015)
Hnf4_3
|
0.774
|
0.586
|
Hnf4
M03938_2.00 |
Drosophila melanogaster |
RTGRACTTTGGACY |
RGTCCAAAGTYCAY |
SELEX
Nitta et al.(2015)
Hnf4_4
|
0.774
|
0.586
|
Hnf4
M06428_2.00 |
Drosophila melanogaster |
DKNKWSSNGGGGTCA |
TGACCCCNSSWMNMH |
B1H
Zhu et al.(2011)
Hnf4_SANGER_10_FBgn0004914
|
0.774
|
0.586
|
Hnf4
M06429_2.00 |
Drosophila melanogaster |
GGGGTCAH |
DTGACCCC |
B1H
Zhu et al.(2011)
Hnf4_SANGER_5_FBgn0004914
|
0.774
|
0.586
|
Hr83
M06434_2.00 |
Drosophila melanogaster |
RAAGTCANHVWVGM |
KCBWBDNTGACTTY |
B1H
Zhu et al.(2011)
Hr83_SANGER_5_FBgn0037436
|
0.774
|
0.571
|
GA30480
M02409_2.00 |
Drosophila pseudoobscura |
RAGATCAM |
KTGATCTY |
PBM
Weirauch et al.(2014)
pTH5877
|
0.767
|
0.686
|
Hr51
M06432_2.00 |
Drosophila melanogaster |
AMRDATCARARGW |
WCYTYTGATHYKT |
B1H
Zhu et al.(2011)
Hr51_SANGER_5_FBgn0034012
|
0.767
|
0.686
|
HNF4G
M08155_2.00 |
Homo sapiens |
NVRGDNCAAAGKYCA |
TGRMCTTTGNHCYBN |
ChIP-seq
Mathelier et al.(2014)
MA0484.1
|
0.752
|
0.571
|
HNF4G
M09287_2.00 |
Homo sapiens |
VRGDNCAAAGKYCA |
TGRMCTTTGNHCYB |
Misc
Kulakovskiy et al.(2013)
HNF4G_HUMAN.H11MO.0.B
|
0.752
|
0.571
|
Hnf4g
M09307_2.00 |
Mus musculus |
VRGDNCAAAGKYCA |
TGRMCTTTGNHCYB |
Misc
Kulakovskiy et al.(2013)
HNF4G_MOUSE.H11MO.0.C
|
0.752
|
0.571
|
HNF4G
M11155_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HNF4G_01
|
0.752
|
0.571
|
HNF4G
M11156_2.00 |
Homo sapiens |
Transfac license required
|
Transfac license required
|
Transfac
Matys et al.(2006)
V$HNF4G_02
|
0.752
|
0.571
|
For this family, TFs with SR scores > 0.745 will likely have a similar motif |