CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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HPBE_0001512201
(
Heligmosomoides bakeri
)
Nuclear receptor
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00105 (zf-C4)
IPR001628
HPBE_0001512201
T308872_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
tll
M02408_2.00
Drosophila melanogaster
NRASGTCAANNN
NNNTTGACSTYN
PBM
Weirauch et al.(2014)
pTH5714
0.943
0.714
tll
M03932_2.00
Drosophila melanogaster
NRAGTCAAAAGTCA
TGACTTTTGACTYN
SELEX
Nitta et al.(2015)
tll_1
0.943
0.714
tll
M03933_2.00
Drosophila melanogaster
NRAGTCAADAAGTCA
TGACTTHTTGACTYN
SELEX
Nitta et al.(2015)
tll_2
0.943
0.714
tll
M06558_2.00
Drosophila melanogaster
WAAAGTCAAM
KTTGACTTTW
B1H
Mathelier et al.(2014)
MA0459.1
0.943
0.714
tll
M06424_2.00
Drosophila melanogaster
AAAGTYA
TRACTTT
B1H
Zhu et al.(2011)
tll_FlyReg_FBgn0003720
0.943
0.714
tll
M06425_2.00
Drosophila melanogaster
WAAAGTCAAM
KTTGACTTTW
B1H
Zhu et al.(2011)
tll_NAR_FBgn0003720
0.943
0.714
tll
M09688_2.00
Drosophila melanogaster
MAAAGTCAAH
DTTGACTTTK
Misc
Kulakovskiy et al.(2009)
tll
0.943
0.714
tll
M11190_2.00
Drosophila melanogaster
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$TLL_Q6
0.943
0.714
For this family, TFs with SR scores >
0.745
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
HPBE_0001512201-mRNA-1
Nuclear receptor
15
92
VPCRVCQDHSSGKHYGIFSCDGCAGFFKRSIRRHRQYVCKNKGGCDEGRLLLGKNRRRTPSYSSACRLRKCLEIGMNK
Links
Other
Nuclear receptor
family TFs
Other
Heligmosomoides bakeri
TFs
130 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy