L898_g25247 (Steinernema monticolum)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 L898_g25247 T309473_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
nhr-6
M01298_2.00
Caenorhabditis elegans
AAAKGTCA

TGACMTTT
PBM
Lambert et al.(2019)
pTH9944
0.975 0.843
Nr4a2
M00818_2.00
Mus musculus
AAAGGTCA

TGACCTTT
PBM
Weirauch et al.(2013)
pTH3467
0.938 0.786
NR4A2
M03383_2.00
Homo sapiens
AGGTCAHNNNDTGACCT

AGGTCAHNNNDTGACCT
SELEX
Jolma et al.(2013)
NR4A2_1
0.938 0.786
NR4A2
M03384_2.00
Homo sapiens
TGACCTTTAAAGGTCA

TGACCTTTAAAGGTCA
SELEX
Jolma et al.(2013)
NR4A2_2
0.938 0.786
NR4A2
M03385_2.00
Homo sapiens
NBTAAAGGTCA

TGACCTTTAVN
SELEX
Jolma et al.(2013)
NR4A2_3
0.938 0.786
NR4A2
M05639_2.00
Homo sapiens
NWAAKGTCAN

NTGACMTTWN
SELEX
Yin et al.(2017)
NR4A2_eDBD_HT-SELEX
0.938 0.786
NR4A2
M05881_2.00
Homo sapiens
NAAAKGTYA

TRACMTTTN
SMiLE-seq
Isakova et al.(2017)
NR4A2
0.938 0.786
NR4A2
M09286_2.00
Homo sapiens
RAAGGTCAV

BTGACCTTY
Misc
Kulakovskiy et al.(2013)
NR4A2_HUMAN.H11MO.0.C
0.938 0.786
Nr4a2
M09323_2.00
Mus musculus
RAAGGTCAV

BTGACCTTY
Misc
Kulakovskiy et al.(2013)
NR4A2_MOUSE.H11MO.0.C
0.938 0.786
NR4A2
M11151_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NURR1_Q3_01
0.938 0.786
NR4A2
M11152_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NURR1_Q3
0.938 0.786
NR4A2
M08461_2.00
Homo sapiens
RAGGTCAM

KTGACCTY
COMPILED
Mathelier et al.(2014)
MA0160.1
0.938 0.786
NR4A2
M05640_2.00
Homo sapiens
NAAAGGTCRN

NYGACCTTTN
SELEX
Yin et al.(2017)
NR4A2_eDBD_Methyl-HT-SELEX
0.938 0.786
Hr38
M03939_2.00
Drosophila melanogaster
NAAAGGTCA

TGACCTTTN
SELEX
Nitta et al.(2015)
Hr38_1
0.911 0.743
NR4A1
M05601_2.00
Homo sapiens
NAAAGGTCAN

NTGACCTTTN
SELEX
Yin et al.(2017)
NR4A1_eDBD_HT-SELEX_1
0.890 0.729
NR4A1
M05602_2.00
Homo sapiens
NAAAGGTCAN

NTGACCTTTN
SELEX
Yin et al.(2017)
NR4A1_eDBD_HT-SELEX_2
0.890 0.729
NR4A1
M08153_2.00
Homo sapiens
NAAAGGTCAN

NTGACCTTTN
ChIP-seq
Mathelier et al.(2014)
MA1112.1
0.890 0.729
NR4A1
M09274_2.00
Homo sapiens
AAAKGBCAN

NTGVCMTTT
Misc
Kulakovskiy et al.(2013)
NR4A1_HUMAN.H11MO.0.A
0.890 0.729
Nr4a1
M09317_2.00
Mus musculus
NRAADGKCA

TGMCHTTYN
Misc
Kulakovskiy et al.(2013)
NR4A1_MOUSE.H11MO.0.B
0.890 0.729
NR4A1
M09608_2.00
Homo sapiens
NNDNAAAGGTCA

TGACCTTTNHNN
Misc
Heinz et al.(2010)
K562-NR4A1_GSE31363
0.890 0.729
NR4A1
M11132_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NUR77_Q5_01
0.890 0.729
NR4A1
M11133_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NUR77_Q5_02
0.890 0.729
NR4A1
M11134_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$NUR77_Q5
0.890 0.729
NR4A1
M05603_2.00
Homo sapiens
NAAAGGTCRN

NYGACCTTTN
SELEX
Yin et al.(2017)
NR4A1_eDBD_Methyl-HT-SELEX_1
0.890 0.729
NR4A1
M05604_2.00
Homo sapiens
NAAAGGTCRN

NYGACCTTTN
SELEX
Yin et al.(2017)
NR4A1_eDBD_Methyl-HT-SELEX_2
0.890 0.729
Q95WG3_ACRMI
M02424_2.00
Acropora millepora
NRAGGTCAN

NTGACCTYN
PBM
Weirauch et al.(2014)
pTH6144
0.803 0.586
Nr2c1
M00812_2.00
Mus musculus
NRRGGTCANN

NNTGACCYYN
PBM
Weirauch et al.(2013)
pTH1284
0.785 0.586
Nr2c1
M02399_2.00
Mus musculus
RRGGTCAH

DTGACCYY
PBM
Weirauch et al.(2014)
pTH3466
0.785 0.586
NR2C1
M05597_2.00
Homo sapiens
NRGKKCRYGAMMYN

NRKKTCRYGMMCYN
SELEX
Yin et al.(2017)
NR2C1_eDBD_HT-SELEX_1
0.785 0.586
NR2C1
M05598_2.00
Homo sapiens
NRRGGTCAN

NTGACCYYN
SELEX
Yin et al.(2017)
NR2C1_eDBD_HT-SELEX_2
0.785 0.586
NR2C1
M09273_2.00
Homo sapiens
RBYVRVAGGTCAB

VTGACCTBYBRVY
Misc
Kulakovskiy et al.(2013)
NR2C1_HUMAN.H11MO.0.C
0.785 0.586
Nr2c1
M09304_2.00
Mus musculus
RBYVRVAGGTCAB

VTGACCTBYBRVY
Misc
Kulakovskiy et al.(2013)
NR2C1_MOUSE.H11MO.0.C
0.785 0.586
NR2C1
M05599_2.00
Homo sapiens
NRRGGTCAN

NTGACCYYN
SELEX
Yin et al.(2017)
NR2C1_eDBD_Methyl-HT-SELEX_1
0.785 0.586
NR2C1
M05600_2.00
Homo sapiens
RRGGTCRYGACCYY

RRGGTCRYGACCYY
SELEX
Yin et al.(2017)
NR2C1_eDBD_Methyl-HT-SELEX_2
0.785 0.586
svp
M06423_2.00
Drosophila melanogaster
ARGGTCA

TGACCYK
B1H
Zhu et al.(2011)
svp_SANGER_5_FBgn0003651
0.749 0.543
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
L898_g25247.t1 Nuclear receptor 49 123
L898_g25247.t2 Nuclear receptor 49 123

Links

Other Nuclear receptor family TFs
Other Steinernema monticolum TFs

470 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00018p00071850 Amborella trichopoda AMTR_s00018p00071850 I 0.000
AT3G12910 Arabidopsis thaliana AT3G12910 D 0.000
ATAF1 Arabidopsis lyrata scaffold_100066.1 I 0.000
BGIOSGA031230 Oryza indica BGIOSGA031230 I 0.000
Bo1g138800 Brassica oleracea Bo1g138800 I 0.000
Bo3g065200 Brassica oleracea Bo3g065200 I 0.000
Bostr.3640s0064 Boechera stricta Bostr.3640s0064 I 0.000
Bra034719 Brassica rapa Bra034719 I 0.000
Bra039353 Brassica rapa Bra039353 I 0.000
BRADI3G13630 Brachypodium distachyon BRADI3G13630 N 0.000
BRADI4G37327 Brachypodium distachyon BRADI4G37327 I 0.000
Cagra.5641s0055 Capsella grandiflora Cagra.5641s0055 I 0.000
Carubv10014270m.g Capsella rubella Carubv10014270m.g I 0.000
Ca_13571 Cicer arietinum Ca_13571 I 0.000
Cla011742 Citrullus lanatus Cla011742 I 0.000
Cla023594 Citrullus lanatus Cla023594 I 0.000
Eucgr.F01463 Eucalyptus grandis Eucgr.F01463 I 0.000
Eucgr.K02303 Eucalyptus grandis Eucgr.K02303 I 0.000
evm.TU.contig_29561 Carica papaya evm.TU.contig_29561 I 0.000
F775_11764 Aegilops tauschii F775_11764 I 0.000
F775_13961 Aegilops tauschii F775_13961 I 0.000
fgenesh2_kg.3__1353__AT3G12910.1 Arabidopsis lyrata fgenesh2_kg.3__1353__AT3G12910.1 I 0.000
Gorai.006G088400 Gossypium raimondii Gorai.006G088400 I 0.000
Gorai.010G171100 Gossypium raimondii Gorai.010G171100 I 0.000
Gorai.010G236700 Gossypium raimondii Gorai.010G236700 I 0.000
GSMUA_Achr10G08120_001 Musa acuminata GSMUA_Achr10G08120_001 I 0.000
GSMUA_Achr11G16860_001 Musa acuminata GSMUA_Achr11G16860_001 I 0.000
GSMUA_Achr4G32010_001 Musa acuminata GSMUA_Achr4G32010_001 I 0.000
GSMUA_Achr6G31580_001 Musa acuminata GSMUA_Achr6G31580_001 I 0.000
GSMUA_Achr9G10040_001 Musa acuminata GSMUA_Achr9G10040_001 I 0.000
LPERR09G14720 Leersia perrieri LPERR09G14720 I 0.000
mgf002365m Mimulus guttatus mgf002365m I 0.000
mgf013201m Mimulus guttatus mgf013201m I 0.000
mgf015836m Mimulus guttatus mgf015836m I 0.000
MLOC_37364 Hordeum vulgare MLOC_37364 I 0.000
MLOC_37843 Hordeum vulgare MLOC_37843 I 0.000
MTR_2g068880 Medicago truncatula MTR_2g068880 I 0.000
MTR_2g068920 Medicago truncatula MTR_2g068920 I 0.000
OB09G25590 Oryza brachyantha OB09G25590 I 0.000
OGLUM09G19480 Oryza glumaepatula OGLUM09G19480 I 0.000
OMERI09G14170 Oryza meridionalis OMERI09G14170 I 0.000
ONIVA09G20130 Oryza nivara ONIVA09G20130 I 0.000
ORGLA09G0151800 Oryza glaberrima ORGLA09G0151800 I 0.000
Pavir.Ba01386 Panicum virgatum Pavir.Ba01386 I 0.000
Pavir.Bb02626 Panicum virgatum Pavir.Bb02626 I 0.000
Pavir.Ia03443 Panicum virgatum Pavir.Ia03443 I 0.000
Pavir.Ib01528 Panicum virgatum Pavir.Ib01528 I 0.000
Pavir.J38855 Panicum virgatum Pavir.J38855 I 0.000
PGSC0003DMG400019615 Solanum tuberosum PGSC0003DMG400019615 I 0.000
PGSC0003DMG400039898 Solanum tuberosum PGSC0003DMG400039898 I 0.000
PK05686.1 Cannabis sativa PK05686.1 I 0.000
POPTR_0003s14950 Populus trichocarpa POPTR_0003s14950 I 0.000
POPTR_0004s04920 Populus trichocarpa POPTR_0004s04920 I 0.000
PRUPE_ppa017765mg Prunus persica PRUPE_ppa017765mg I 0.000
SapurV1A.0059s0580 Salix purpurea SapurV1A.0059s0580 I 0.000
SapurV1A.0076s0070 Salix purpurea SapurV1A.0076s0070 I 0.000
SapurV1A.0093s0260 Salix purpurea SapurV1A.0093s0260 I 0.000
Sb02g032230 Sorghum bicolor Sb02g032230 I 0.000
Sb08g022560 Sorghum bicolor Sb08g022560 I 0.000
Si022714m.g Setaria italica Si022714m.g I 0.000
Si032702m.g Setaria italica Si032702m.g I 0.000
Si036303m.g Setaria italica Si036303m.g I 0.000
Solyc06g074170.2 Solanum lycopersicum Solyc06g074170.2 I 0.000
Solyc11g068750.1 Solanum lycopersicum Solyc11g068750.1 I 0.000
TCM_029321 Theobroma cacao TCM_029321 I 0.000
Thhalv10012158m.g Eutrema salsugineum Thhalv10012158m.g I 0.000
Thhalv10021225m.g Eutrema salsugineum Thhalv10021225m.g I 0.000
Traes_5BL_8BE382FE3 Triticum aestivum Traes_5BL_8BE382FE3 I 0.000
Traes_5DL_B69423A67 Triticum aestivum Traes_5DL_B69423A67 I 0.000
Traes_7DL_D05DA373C Triticum aestivum Traes_7DL_D05DA373C I 0.000
TRIUR3_13805 Triticum urartu TRIUR3_13805 I 0.000
TRIUR3_18561 Triticum urartu TRIUR3_18561 I 0.000
TRIUR3_29260 Triticum urartu TRIUR3_29260 I 0.000
VIT_19s0027g00840 Vitis vinifera VIT_19s0027g00840 I 0.000
VIT_19s0027g00910 Vitis vinifera VIT_19s0027g00910 I 0.000