SSLN_0000693201 (Schistocephalus solidus)
Nuclear receptor

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00105 (zf-C4) IPR001628 SSLN_0000693201 T310560_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RORC
M05621_2.00 		Homo sapiens
KRGGTCAYGMCCYM
KRGGKCRTGACCYM		 SELEX
Yin et al.(2017)
RORC_eDBD_HT-SELEX_1 		0.756 0.537
RORC
M05622_2.00 		Homo sapiens
NAWNKRGGTYANTRGGTCAN
NTGACCYANTRACCYMNWTN		 SELEX
Yin et al.(2017)
RORC_eDBD_HT-SELEX_2 		0.756 0.537
RORC
M05880_2.00 		Homo sapiens
NDAWNTRGGKCA
TGMCCYANWTHN		 SMiLE-seq
Isakova et al.(2017)
RORc 		0.756 0.537
RORC
M09282_2.00 		Homo sapiens
NDAWSTRRGTCA
TGACYYASWTHN		 Misc
Kulakovskiy et al.(2013)
RORG_HUMAN.H11MO.0.C 		0.756 0.537
RORC
M05623_2.00 		Homo sapiens
TRGGTCAYGACCYA
TRGGTCRTGACCYA		 SELEX
Yin et al.(2017)
RORC_eDBD_Methyl-HT-SELEX_1 		0.756 0.537
RORC
M05624_2.00 		Homo sapiens
NAWNTRGGTYASTAGGTCAN
NTGACCTASTRACCYANWTN		 SELEX
Yin et al.(2017)
RORC_eDBD_Methyl-HT-SELEX_2 		0.756 0.537
For this family, TFs with SR scores > 0.745 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SSLN_0000693201-mRNA-1 Nuclear receptor 1 67

Links

Other Nuclear receptor family TFs
Other Schistocephalus solidus TFs

13 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SPER_0003977401 Spirometra erinaceieuropaei SPER_0003977401 I 0.989
SPER_0002219401 Spirometra erinaceieuropaei SPER_0002219401 I 0.989
DILT_0001314401 Diphyllobothrium latum DILT_0001314401 I 0.974
RORC Pan troglodytes ENSPTRG00000032436 I 0.756
ENSP00000376461 Macaca fascicularis ENSP00000376461 I 0.756
ENSPPYG00000000853 Pongo abelii ENSPPYG00000000853 I 0.756
ENSPANG00000020758 Papio anubis ENSPANG00000020758 I 0.756
RORC Homo sapiens ENSG00000143365 D 0.756
ENSCSAG00000001825 Chlorocebus sabaeus ENSCSAG00000001825 I 0.756
RORC Gorilla gorilla ENSGGOG00000002223 I 0.756
RORC Macaca mulatta ENSMMUG00000012138 I 0.756
ENSNLEG00000010305 Nomascus leucogenys ENSNLEG00000010305 I 0.756
RORC Callithrix jacchus ENSCJAG00000008023 I 0.756