YQE_12361 (Dendroctonus ponderosae)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 YQE_12361 T312128_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM

KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.992 0.992
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS

SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.992 0.992
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN

NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.992 0.992
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR

YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.910 0.910
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN

NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.910 0.910
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN

NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.885 0.885
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN

NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.885 0.885
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN

NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.885 0.885
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC

GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.885 0.885
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC

GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.885 0.885
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN

NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.885 0.885
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC

GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.885 0.885
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM

KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.885 0.885
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG

CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.885 0.885
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC

GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.885 0.885
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM

KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.885 0.885
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN

NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.885 0.885
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC

GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.885 0.885
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB

VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.885 0.885
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH

DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.885 0.885
PAX5
M11210_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.885 0.885
PAX5
M11211_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.885 0.885
PAX5
M11212_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.885 0.885
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN

NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.844 0.844
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM

KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.844 0.844
PAX8
M11205_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.844 0.844
PAX8
M11206_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.844 0.844
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.844 0.844
egl-38
M02426_2.00
Caenorhabditis elegans
ACCGTGAYCAC

GTGRTCACGGT
PBM
Weirauch et al.(2014)
pTH8981
0.746 0.746
pax-2
M00706_2.00
Caenorhabditis elegans
RMSCRTRACS

SGTYAYGSKY
PBM
Narasimhan et al.(2015)
pTH10794
0.746 0.746
PAX1
M03442_2.00
Homo sapiens
DBCANTSAWGCGTGACS

SGTCACGCWTSANTGVH
SELEX
Jolma et al.(2013)
PAX1_1
0.721 0.721
PAX9
M03444_2.00
Homo sapiens
NKCANTSAWGCGTGACS

SGTCACGCWTSANTGMN
SELEX
Jolma et al.(2013)
PAX9_1
0.721 0.721
Poxm
M03944_2.00
Drosophila melanogaster
CAVTCAWGCGTGACR

YGTCACGCWTGABTG
SELEX
Nitta et al.(2015)
Poxm_1
0.721 0.721
Poxm
M03945_2.00
Drosophila melanogaster
NYSAWGCRTRACS

SGTYAYGCWTSRN
SELEX
Nitta et al.(2015)
Poxm_2
0.721 0.721
PAX1
M05687_2.00
Homo sapiens
BCRNTSRWGCGTGACSN

NSGTCACGCWYSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX
0.721 0.721
PAX9
M05689_2.00
Homo sapiens
BHRNYSRDSCGTRACSN

NSGTYACGSHYSRNYDV
SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX
0.721 0.721
Poxm
M06436_2.00
Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA

TCAYGSNYNDNBKNNNNNN
B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129
0.721 0.721
PAX1
M11207_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX1_B
0.721 0.721
PAX1
M05688_2.00
Homo sapiens
BCRNTSAWGCGTGACSN

NSGTCACGCWTSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX
0.721 0.721
PAX9
M05690_2.00
Homo sapiens
BCRNTSAWSCGYGACNN

NNGTCRCGSWTSANYGV
SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX
0.721 0.721
PAX7
M00346_2.00
Homo sapiens
NGTYAYGSHN

NDSCRTRACN
PBM
Barrera et al.(2016)
PAX7_REF
0.713 0.713
pax9
M11204_2.00
Danio rerio Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX9_B
0.713 0.713
Poxn
M03946_2.00
Drosophila melanogaster
DGCGTGACSGTCACGSY

RSCGTGACSGTCACGCH
SELEX
Nitta et al.(2015)
Poxn_1
0.705 0.705
Poxn
M03947_2.00
Drosophila melanogaster
RSCGKGACSGTTMCGSW

WSCGKAACSGTCMCGSY
SELEX
Nitta et al.(2015)
Poxn_2
0.705 0.705
Poxn
M03948_2.00
Drosophila melanogaster
NCGTTCCGGAACGD

HCGTTCCGGAACGN
SELEX
Nitta et al.(2015)
Poxn_3
0.705 0.705
Poxn
M06437_2.00
Drosophila melanogaster
RSCGTGACG

CGTCACGSY
B1H
Zhu et al.(2011)
Poxn_SOLEXA_5_FBgn0003130
0.705 0.705
PAX7
M00345_2.00
Homo sapiens
NSGTCACGSN

NSCGTGACSN
PBM
Barrera et al.(2016)
PAX7_P112L
0.705 0.705
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENN70960 Paired box 4 125

Links

Other Paired box family TFs
Other Dendroctonus ponderosae TFs

524 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AOL_s00054g426 Arthrobotrys oligospora AOL_s00054g426 I 0.000
ASIM_0001224701 Anisakis simplex ASIM_0001224701 I 0.000
augustus_masked-nMf.1.1.scaf18364-processed-gene-0.0 Meloidogyne floridensis augustus_masked-nMf.1.1.scaf18364-processed-gene-0.0 N 0.000
AWRI1499_3461 Brettanomyces bruxellensis AWRI1499_3461 I 0.000
A_02406 Schistosoma haematobium A_02406 I 0.000
BBA_09764 Beauveria bassiana BBA_09764 I 0.000
Bcin08g06620 Botrytis cinerea Bcin08g06620 I 0.000
BGHDH14_bgh05455 Blumeria graminis BGHDH14_bgh05455 I 0.000
BN946_scf184355.g3 Trametes cinnabarina BN946_scf184355.g3 I 0.000
BOTBODRAFT_273374 Botryobasidium botryosum BOTBODRAFT_273374 I 0.000
CC1G_12380 Coprinopsis cinerea CC1G_12380 I 0.000
CCM_01917 Cordyceps militaris CCM_01917 I 0.000
CERSUDRAFT_57020 Ceriporiopsis subvermispora CERSUDRAFT_57020 N 0.000
CFIO01_08636 Colletotrichum fioriniae CFIO01_08636 I 0.000
CGGC5_8911 Colletotrichum gloeosporioides CGGC5_8911 I 0.000
CGI_10025669 Crassostrea gigas CGI_10025669 I 0.000
CH063_09099 Colletotrichum higginsianum CH063_09099 I 0.000
CMQ_7465 Grosmannia clavigera CMQ_7465 I 0.000
Cob_09008 Colletotrichum orbiculare Cob_09008 I 0.000
CPUR_02900 Claviceps purpurea CPUR_02900 I 0.000
csin102876 Clonorchis sinensis csin102876 I 0.000
CSUB01_05911 Colletotrichum sublineola CSUB01_05911 I 0.000
D915_05896 Fasciola hepatica D915_05896 I 0.000
DACRYDRAFT_114058 Dacryopinax sp DACRYDRAFT_114058 I 0.000
DICSQDRAFT_44553 Dichomitus squalens DICSQDRAFT_44553 I 0.000
DILT_0000534401 Diphyllobothrium latum DILT_0000534401 I 0.000
DRE_02305 Drechslerella stenobrocha DRE_02305 I 0.000
ECANG7_06581 Echinococcus canadensis ECANG7_06581 I 0.000
ECPE_0001225801 Echinostoma caproni ECPE_0001225801 I 0.000
EFA86584.1 Polysphondylium pallidum EFA86584.1 I 0.000
EmuJ_000915650 Echinococcus multilocularis EmuJ_000915650 I 0.000
ENSSHAG00000005284 Sarcophilus harrisii ENSSHAG00000005284 I 0.000
estExt_fgenesh2_pg.C_10368 Neurospora discreta estExt_fgenesh2_pg.C_10368 I 0.000
estExt_fgeneshDP_pg.C_350041 Dictyostelium purpureum estExt_fgeneshDP_pg.C_350041 I 0.000
EV44_g5529 Erysiphe necator EV44_g5529 I 0.000
e_gw1.17.43.1 Nectria haematococca e_gw1.17.43.1 I 0.000
F503_08379 Ophiostoma piceae uamh F503_08379 I 0.000
FFUJ_08943 Fusarium fujikuroi FFUJ_08943 I 0.000
fgenesh1_pg.C_scaffold_7000173 Phanerochaete chrysosporium fgenesh1_pg.C_scaffold_7000173 I 0.000
fgeneshMC_pg.6_#_85 Mucor circinelloides fgeneshMC_pg.6_#_85 I 0.000
fgeneshPB_pg.1__552 Phycomyces blakesleeanus fgeneshPB_pg.1__552 I 0.000
FGRRES_09019 Fusarium graminearum FGRRES_09019 I 0.000
FIBRA_06885 Fibroporia radiculosa FIBRA_06885 I 0.000
FOMPIDRAFT_1135811 Fomitopsis pinicola FOMPIDRAFT_1135811 I 0.000
FPSE_07078 Fusarium pseudograminearum FPSE_07078 I 0.000
GALMADRAFT_67940 Galerina marginata GALMADRAFT_67940 I 0.000
Genemark.8171_g Heterobasidion annosum Genemark.8171_g N 0.000
GGTG_14272 Gaeumannomyces graminis GGTG_14272 I 0.000
GLOTRDRAFT_62830 Gloeophyllum trabeum GLOTRDRAFT_62830 I 0.000
GLRG_04843 Colletotrichum graminicola GLRG_04843 I 0.000
GMDG_01699 Pseudogymnoascus destructans GMDG_01699 I 0.000
gw1.2.930.1 Phycomyces blakesleeanus gw1.2.930.1 I 0.000
gw1.4.514.1 Phycomyces blakesleeanus gw1.4.514.1 I 0.000
gw1.5.922.1 Mucor circinelloides gw1.5.922.1 I 0.000
gw1.7.573.1 Mucor circinelloides gw1.7.573.1 I 0.000
GYMLUDRAFT_72414 Gymnopus luxurians GYMLUDRAFT_72414 I 0.000
H072_3561 Dactylellina haptotyla H072_3561 I 0.000
HETIRDRAFT_316855 Heterobasidion irregulare HETIRDRAFT_316855 I 0.000
HMPREF1624_02616 Sporothrix schenckii HMPREF1624_02616 I 0.000
HPODL_05037 Ogataea parapolymorpha HPODL_05037 N 0.000
JAAARDRAFT_435587 Jaapia argillacea JAAARDRAFT_435587 I 0.000
JL09_g3549 Pichia kudriavzevii JL09_g3549 I 0.000
K443DRAFT_118259 Laccaria amethystina K443DRAFT_118259 I 0.000
kal-1 Neurospora crassa NCU03593 D 0.000
LACBIDRAFT_297319 Laccaria bicolor LACBIDRAFT_297319 I 0.000
LotgiG235859 Lottia gigantea LotgiG235859 N 0.000
M404DRAFT_929271 Pisolithus tinctorius M404DRAFT_929271 I 0.000
M408DRAFT_329958 Serendipita vermifera M408DRAFT_329958 I 0.000
M413DRAFT_28906 Hebeloma cylindrosporum M413DRAFT_28906 I 0.000
M7I_3672 Glarea lozoyensis M7I_3672 I 0.000
MAC_07310 Metarhizium acridum MAC_07310 I 0.000
MAJ_09430 Metarhizium majus MAJ_09430 I 0.000
maker-nMf.1.1.scaf04436-snap-gene-0.5 Meloidogyne floridensis maker-nMf.1.1.scaf04436-snap-gene-0.5 N 0.000
MAM_07140 Metarhizium album MAM_07140 I 0.000
MANI_005260 Metarhizium anisopliae MANI_005260 I 0.000
MAPG_09605 Magnaporthe poae MAPG_09605 I 0.000
MBM_01133 Marssonina brunnea MBM_01133 I 0.000
MBR_09861 Metarhizium brunneum MBR_09861 I 0.000
MGG_04853 Magnaporthe oryzae MGG_04853 I 0.000
MGU_07058 Metarhizium guizhouense MGU_07058 I 0.000
MhA1_Contig2300.frz3.gene2 Meloidogyne hapla MhA1_Contig2300.frz3.gene2 N 0.000
Moror_24 Moniliophthora roreri Moror_24 I 0.000
MPER_07921 Moniliophthora perniciosa MPER_07921 I 0.000
NechaG46180 Fusarium solani NechaG46180 I 0.000
NEUTE1DRAFT_116070 Neurospora tetrasperma NEUTE1DRAFT_116070 I 0.000
OCS_03121 Ophiocordyceps sinensis OCS_03121 I 0.000
OIDMADRAFT_115588 Oidiodendron maius OIDMADRAFT_115588 I 0.000
PAS_chr2-2_0043 Komagataella pastoris PAS_chr2-2_0043 N 0.000
PAXINDRAFT_12861 Paxillus involutus PAXINDRAFT_12861 I 0.000
PAXRUDRAFT_210495 Paxillus rubicundulus PAXRUDRAFT_210495 I 0.000
PFICI_09611 Pestalotiopsis fici PFICI_09611 I 0.000
PHACADRAFT_182311 Phanerochaete carnosa PHACADRAFT_182311 N 0.000
PHLGIDRAFT_100262 Phlebiopsis gigantea PHLGIDRAFT_100262 I 0.000
PHLGIDRAFT_10905 Phlebiopsis gigantea PHLGIDRAFT_10905 I 0.000
PIIN_06801 Piriformospora indica PIIN_06801 I 0.000
PILCRDRAFT_6622 Piloderma croceum PILCRDRAFT_6622 I 0.000
PISMIDRAFT_97497 Pisolithus microcarpus PISMIDRAFT_97497 I 0.000
PLEOSDRAFT_1011447 Pleurotus ostreatus PLEOSDRAFT_1011447 I 0.000
PLICRDRAFT_366051 Plicaturopsis crispa PLICRDRAFT_366051 I 0.000
POSPLDRAFT_91424 Postia placenta POSPLDRAFT_91424 I 0.000
POSPLDRAFT_96600 Postia placenta POSPLDRAFT_96600 I 0.000
Ppa-zag-1 Pristionchus pacificus PPA06385 N 0.000
PUNSTDRAFT_128149 Punctularia strigosozonata PUNSTDRAFT_128149 I 0.000
PXEA_0002165701 Protopolystoma xenopodis PXEA_0002165701 I 0.000
Q86SD7_PODCA Podocoryne carnea Q86SD7_PODCA D 0.000
RO3G_03825 Rhizopus oryzae RO3G_03825 I 0.000
RO3G_04153 Rhizopus oryzae RO3G_04153 I 0.000
RO3G_04843 Rhizopus oryzae RO3G_04843 I 0.000
RO3G_09595 Rhizopus oryzae RO3G_09595 I 0.000
RO3G_10319 Rhizopus oryzae RO3G_10319 I 0.000
RO3G_12689 Rhizopus oryzae RO3G_12689 I 0.000
SBOR_4438 Sclerotinia borealis SBOR_4438 I 0.000
SCLCIDRAFT_793812 Scleroderma citrinum SCLCIDRAFT_793812 I 0.000
SCUD_0001655801 Schistosoma curassoni SCUD_0001655801 I 0.000
SERLA73DRAFT_90145 Serpula lacrymans SERLA73DRAFT_90145 I 0.000
Sjc_0105010 Schistosoma japonicum Sjc_0105010 I 0.000
SMAC_03124 Sordaria macrospora SMAC_03124 I 0.000
SMRZ_0000721601 Schistosoma margrebowiei SMRZ_0000721601 I 0.000
SMTD_0002243101 Schistosoma mattheei SMTD_0002243101 I 0.000
SMU15012780 Schmidtea mediterranea SMU15012780 I 0.000
SMU15037895 Schmidtea mediterranea SMU15037895 I 0.000
SPBR_02439 Sporothrix brasiliensis SPBR_02439 I 0.000
SPER_0001880401 Spirometra erinaceieuropaei SPER_0001880401 I 0.000
SPER_0003105501 Spirometra erinaceieuropaei SPER_0003105501 I 0.000
SPPG_03702 Spizellomyces punctatus SPPG_03702 I 0.000
SPPG_05154 Spizellomyces punctatus SPPG_05154 N 0.000
SPPG_05249 Spizellomyces punctatus SPPG_05249 I 0.000
SSLN_0001304301 Schistocephalus solidus SSLN_0001304301 I 0.000
SVE_0701500 Strongyloides venezuelensis SVE_0701500 N 0.000
T265_09780 Opisthorchis viverrini T265_09780 I 0.000
TASK_0000469001 Taenia asiatica TASK_0000469001 I 0.000
TsM_000611800 Taenia solium TsM_000611800 I 0.000
TsM_000892700 Taenia solium TsM_000892700 I 0.000
TTAC_0000915701 Hydatigera taeniaeformis TTAC_0000915701 I 0.000
UCREL1_10957 Eutypa lata UCREL1_10957 I 0.000
UCRPA7_6974 Togninia minima UCRPA7_6974 I 0.000
V499_08137 Pseudogymnoascus pannorum V499_08137 I 0.000
V565_069290 Rhizoctonia solani V565_069290 I 0.000
VDAG_05070 Verticillium dahliae VDAG_05070 I 0.000
VHEMI08470 Torrubiella hemipterigena VHEMI08470 I 0.000
VICG_01325 Vittaforma corneae VICG_01325 I 0.000
warA Dictyostelium discoideum DDB_G0291075 I 0.000
X797_009738 Metarhizium robertsii X797_009738 I 0.000
XP_002492171.1 Pichia pastoris XP_002492171.1 N 0.000