CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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BTMF_0001750801
(
Brugia timori
)
Paired box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00292 (PAX)
IPR001523
BTMF_0001750801
T312562_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Pax5B
M01301_2.00
Gallus gallus
NSNDTNNNN
NNNNAHNSN
PBM
Lambert et al.(2019)
pTH9781
0.880
0.880
PAX5
M03443_2.00
Homo sapiens
RNBYANYSAWSCGTRACN
NGTYACGSWTSRNTRVNY
SELEX
Jolma et al.(2013)
PAX5_1
0.880
0.880
PAX5
M08160_2.00
Homo sapiens
RDGCGTGACCNN
NNGGTCACGCHY
ChIP-seq
Mathelier et al.(2014)
MA0014.3
0.880
0.880
PAX5
M07995_2.00
Homo sapiens
BCAVYSRDSCRKRRC
GYYMYGSHYSRBTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5C20_HudsonAlpha
0.880
0.880
PAX5
M07996_2.00
Homo sapiens
BCASYSRDSCRTRAC
GTYAYGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12878_PAX5N19_HudsonAlpha
0.880
0.880
PAX5
M07997_2.00
Homo sapiens
CASYSRDSCRKRACN
NGTYMYGSHYSRSTG
ChIP-seq
Gerstein et al.(2012)
GM12891_PAX5C20_HudsonAlpha
0.880
0.880
PAX5
M07998_2.00
Homo sapiens
BCASYSRDSCGKRRC
GYYMCGSHYSRSTGV
ChIP-seq
Gerstein et al.(2012)
GM12892_PAX5C20_HudsonAlpha
0.880
0.880
PAX5
M08227_2.00
Homo sapiens
BCANYSRDGCGTRAM
KTYACGCHYSRNTGV
ChIP-seq
Contrino et al.(2012)
Mv108
0.880
0.880
PAX5
M08228_2.00
Homo sapiens
AGCGTGRCYG
CRGYCACGCT
ChIP-seq
Contrino et al.(2012)
Mv109
0.880
0.880
PAX5
M09341_2.00
Homo sapiens
SNVDGNKCARCVRAGCRDGAC
GTCHYGCTYBGYTGMNCHBNS
Misc
Kulakovskiy et al.(2013)
PAX5_HUMAN.H11MO.0.A
0.880
0.880
Pax5
M09342_2.00
Mus musculus
VDRNBCAVYVRDSCRKRRM
KYYMYGSHYBRBTGVNYHB
Misc
Kulakovskiy et al.(2013)
PAX5_MOUSE.H11MO.0.A
0.880
0.880
PAX5
M09622_2.00
Homo sapiens
BCASYSRDSCRTGRMN
NKYCAYGSHYSRSTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_1
0.880
0.880
PAX5
M09623_2.00
Homo sapiens
BCABNVRSCGTGAC
GTCACGSYBNVTGV
Misc
Heinz et al.(2010)
GM12878-PAX5_GSE32465_2
0.880
0.880
PAX5
M11208_2.00
Homo sapiens
BCNNNRNKCANBGNWGNRKRGMSRSHNB
VNDSYSKCYMYNCWNCVNTGMNYNNNGV
Transfac
Matys et al.(2006)
V$PAX5_01
0.880
0.880
PAX5
M11209_2.00
Homo sapiens
VRHVDGDNDBBTNRAGCGKRACVRYNVH
DBNRYBGTYMCGCTYNAVVHNHCHBDYB
Transfac
Matys et al.(2006)
V$PAX5_02
0.880
0.880
PAX5
M11210_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_06
0.880
0.880
PAX5
M11211_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_07
0.880
0.880
PAX5
M11212_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX5_Q6
0.880
0.880
pax2b
M02425_2.00
Danio rerio
HVNYSRNSCR
YGSNYSRNBD
PBM
Weirauch et al.(2014)
pTH8679
0.860
0.860
pax2
M02428_2.00
Xenopus tropicalis
NNNRNBCRNN
NNYGVNYNNN
PBM
Weirauch et al.(2014)
pTH8556
0.860
0.860
PAX8
M05685_2.00
Homo sapiens
NRNBYRNYSRWGCGTGACSN
NSGTCACGCWYSRNYRVNYN
SELEX
Yin et al.(2017)
PAX8_FL_HT-SELEX
0.860
0.860
Pax8
M09624_2.00
Rattus norvegicus
BCAGBCADSCRKGVM
KBCMYGSHTGVCTGV
Misc
Heinz et al.(2010)
Thyroid-Pax8_GSE26938
0.860
0.860
PAX8
M11205_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_01
0.860
0.860
PAX8
M11206_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX8_B
0.860
0.860
PAX8
M05686_2.00
Homo sapiens
NRNBCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGVNYN
SELEX
Yin et al.(2017)
PAX8_FL_Methyl-HT-SELEX
0.860
0.860
sv
M01302_2.00
Drosophila melanogaster
NNNSCRBRDM
KHYVYGSNNN
PBM
Lambert et al.(2019)
pTH9773
0.820
0.820
sv
M03949_2.00
Drosophila melanogaster
NBCRNYSAWGCGTGACS
SGTCACGCWTSRNYGVN
SELEX
Nitta et al.(2015)
sv_1
0.820
0.820
sv
M06438_2.00
Drosophila melanogaster
RNYSRDSCGTRACNN
NNGTYACGSHYSRNY
B1H
Zhu et al.(2011)
sv_SOLEXA_5_FBgn0005561
0.820
0.820
egl-38
M02426_2.00
Caenorhabditis elegans
ACCGTGAYCAC
GTGRTCACGGT
PBM
Weirauch et al.(2014)
pTH8981
0.810
0.810
pax-2
M00706_2.00
Caenorhabditis elegans
RMSCRTRACS
SGTYAYGSKY
PBM
Narasimhan et al.(2015)
pTH10794
0.810
0.810
Poxn
M03946_2.00
Drosophila melanogaster
DGCGTGACSGTCACGSY
RSCGTGACSGTCACGCH
SELEX
Nitta et al.(2015)
Poxn_1
0.730
0.730
Poxn
M03947_2.00
Drosophila melanogaster
RSCGKGACSGTTMCGSW
WSCGKAACSGTCMCGSY
SELEX
Nitta et al.(2015)
Poxn_2
0.730
0.730
Poxn
M03948_2.00
Drosophila melanogaster
NCGTTCCGGAACGD
HCGTTCCGGAACGN
SELEX
Nitta et al.(2015)
Poxn_3
0.730
0.730
Poxn
M06437_2.00
Drosophila melanogaster
RSCGTGACG
CGTCACGSY
B1H
Zhu et al.(2011)
Poxn_SOLEXA_5_FBgn0003130
0.730
0.730
PAX1
M03442_2.00
Homo sapiens
DBCANTSAWGCGTGACS
SGTCACGCWTSANTGVH
SELEX
Jolma et al.(2013)
PAX1_1
0.720
0.720
PAX9
M03444_2.00
Homo sapiens
NKCANTSAWGCGTGACS
SGTCACGCWTSANTGMN
SELEX
Jolma et al.(2013)
PAX9_1
0.720
0.720
Poxm
M03944_2.00
Drosophila melanogaster
CAVTCAWGCGTGACR
YGTCACGCWTGABTG
SELEX
Nitta et al.(2015)
Poxm_1
0.720
0.720
Poxm
M03945_2.00
Drosophila melanogaster
NYSAWGCRTRACS
SGTYAYGCWTSRN
SELEX
Nitta et al.(2015)
Poxm_2
0.720
0.720
PAX1
M05687_2.00
Homo sapiens
BCRNTSRWGCGTGACSN
NSGTCACGCWYSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_HT-SELEX
0.720
0.720
PAX9
M05689_2.00
Homo sapiens
BHRNYSRDSCGTRACSN
NSGTYACGSHYSRNYDV
SELEX
Yin et al.(2017)
PAX9_eDBD_HT-SELEX
0.720
0.720
Poxm
M06436_2.00
Drosophila melanogaster
NNNNNNMVNHNRNSCRTGA
TCAYGSNYNDNBKNNNNNN
B1H
Zhu et al.(2011)
Poxm_SOLEXA_5_FBgn0003129
0.720
0.720
PAX1
M11207_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX1_B
0.720
0.720
PAX1
M05688_2.00
Homo sapiens
BCRNTSAWGCGTGACSN
NSGTCACGCWTSANYGV
SELEX
Yin et al.(2017)
PAX1_eDBD_Methyl-HT-SELEX
0.720
0.720
PAX9
M05690_2.00
Homo sapiens
BCRNTSAWSCGYGACNN
NNGTCRCGSWTSANYGV
SELEX
Yin et al.(2017)
PAX9_eDBD_Methyl-HT-SELEX
0.720
0.720
PAX7
M00346_2.00
Homo sapiens
NGTYAYGSHN
NDSCRTRACN
PBM
Barrera et al.(2016)
PAX7_REF
0.710
0.710
pax9
M11204_2.00
Danio rerio
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PAX9_B
0.710
0.710
PAX7
M00345_2.00
Homo sapiens
NSGTCACGSN
NSCGTGACSN
PBM
Barrera et al.(2016)
PAX7_P112L
0.700
0.700
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
BTMF_0001750801-mRNA-1
Paired box
1
100
IVELAHQGVRPCDISRQLRVSHGCVSKILGRYYETGSIRPGVIGGSKPKVATPKVVQTIAAYKRANPTMFAWEIREKLLEERVCDSENVPSVSSINRIVR
Links
Other
Paired box
family TFs
Other
Brugia timori
TFs
443 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ACLA_037430
Aspergillus clavatus
CADACLAG00003256
N
0.000
ACRE_009170
Acremonium chrysogenum
ACRE_009170
I
0.000
AFUA_3G09670
Aspergillus fumigatus
CADAFUAG00004963
N
0.000
ANIA_03075
Aspergillus nidulans
CADANIAG00010003
N
0.000
ARB_01185
Arthroderma benhamiae
ARB_01185
N
0.000
ATEG_04481
Aspergillus terreus
CADATEAG00009053
N
0.000
BAUCODRAFT_70890
Baudoinia compniacensis
BAUCODRAFT_70890
I
0.000
BBA_00740
Beauveria bassiana
BBA_00740
I
0.000
Bcin02g05460
Botrytis cinerea
Bcin02g05460
I
0.000
BDDG_03436
Blastomyces dermatitidis
BDDG_03436
N
0.000
CADAFLAG00001296
Aspergillus flavus
CADAFLAG00001296
N
0.000
CADANGAG00012801
Aspergillus niger
CADANGAG00012801
N
0.000
CADAORAG00003168
Aspergillus oryzae
CADAORAG00003168
N
0.000
CCM_05966
Cordyceps militaris
CCM_05966
I
0.000
CFIO01_08325
Colletotrichum fioriniae
CFIO01_08325
I
0.000
CGGC5_10678
Colletotrichum gloeosporioides
CGGC5_10678
I
0.000
CH063_10224
Colletotrichum higginsianum
CH063_10224
I
0.000
CHGG_09596
Chaetomium globosum
CHGG_09596
I
0.000
CIMG_01913
Coccidioides immitis
CIMG_01913
N
0.000
CMQ_3768
Grosmannia clavigera
CMQ_3768
I
0.000
Cob_01903
Colletotrichum orbiculare
Cob_01903
I
0.000
CPC735_046040
Coccidioides posadasii
CPC735_046040
N
0.000
CSUB01_08919
Colletotrichum sublineola
CSUB01_08919
I
0.000
DOTSEDRAFT_54819
Dothistroma septosporum
DOTSEDRAFT_54819
I
0.000
estExt_fgenesh1_pg.C_chr_60424
Mycosphaerella graminicola
estExt_fgenesh1_pg.C_chr_60424
I
0.000
estExt_Genewise1Plus.C_13865
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_13865
I
0.000
estExt_Genewise1Plus.C_90712
Neurospora discreta
estExt_Genewise1Plus.C_90712
I
0.000
e_gw1.8.145.1
Cryphonectria parasitica
e_gw1.8.145.1
I
0.000
F503_03706
Ophiostoma piceae uamh
F503_03706
I
0.000
FFUJ_08392
Fusarium fujikuroi
FFUJ_08392
I
0.000
fgenesh1_pm.00168_#_210
Aspergillus carbonarius
fgenesh1_pm.00168_#_210
N
0.000
fgenesh1_pm.sca_12_chr5_2_0000158
Nectria haematococca
fgenesh1_pm.sca_12_chr5_2_0000158
I
0.000
FGRRES_17514
Fusarium graminearum
FGRRES_17514
I
0.000
FPSE_08858
Fusarium pseudograminearum
FPSE_08858
I
0.000
GGTG_02446
Gaeumannomyces graminis
GGTG_02446
I
0.000
GLRG_09279
Colletotrichum graminicola
GLRG_09279
I
0.000
GMDG_05510
Pseudogymnoascus destructans
GMDG_05510
I
0.000
GMDG_06850
Pseudogymnoascus destructans
GMDG_06850
I
0.000
GSTUM_00003233001
Tuber melanosporum
GSTUM_00003233001
N
0.000
GSTUM_00008124001
Tuber melanosporum
GSTUM_00008124001
N
0.000
H101_05235
Trichophyton interdigitale
H101_05235
N
0.000
H102_08372
Trichophyton rubrum
H102_08372
N
0.000
H105_08399
Trichophyton soudanense
H105_08399
N
0.000
HCBG_02521
Histoplasma capsulatum
HCBG_02521
N
0.000
HMPREF1624_04642
Sporothrix schenckii
HMPREF1624_04642
I
0.000
M7I_1858
Glarea lozoyensis
M7I_1858
I
0.000
MANI_011716
Metarhizium anisopliae
MANI_011716
I
0.000
MAPG_09501
Magnaporthe poae
MAPG_09501
I
0.000
MBM_07119
Marssonina brunnea
MBM_07119
N
0.000
MBR_04909
Metarhizium brunneum
MBR_04909
I
0.000
MCYG_03418
Microsporum canis
MCYG_03418
N
0.000
MCYG_03418
Arthroderma otae
MCYG_03418
N
0.000
MGU_01761
Metarhizium guizhouense
MGU_01761
I
0.000
MGYG_00581
Microsporum gypseum
MGYG_00581
N
0.000
MPH_00135
Macrophomina phaseolina
MPH_00135
N
0.000
MYCFIDRAFT_204155
Pseudocercospora fijiensis
MYCFIDRAFT_204155
I
0.000
Mycgr3G109947
Zymoseptoria tritici
Mycgr3G109947
I
0.000
MYCTH_2308823
Myceliophthora thermophila
MYCTH_2308823
I
0.000
NCU02307
Neurospora crassa
NCU02307
D
0.000
NechaG93341
Fusarium solani
NechaG93341
I
0.000
NEUTE1DRAFT_124026
Neurospora tetrasperma
NEUTE1DRAFT_124026
I
0.000
NFIA_067630
Neosartorya fischeri
CADNFIAG00006385
N
0.000
OCS_02179
Ophiocordyceps sinensis
OCS_02179
I
0.000
Pc12g15860
Penicillium chrysogenum
Pc12g15860
N
0.000
PCH_Pc12g15860
Penicillium rubens
PCH_Pc12g15860
N
0.000
PDE_04982
Penicillium oxalicum
PDE_04982
N
0.000
PDIP_76170
Penicillium digitatum
PDIP_76170
N
0.000
PEX1_096620
Penicillium expansum
PEX1_096620
N
0.000
PFICI_14476
Pestalotiopsis fici
PFICI_14476
I
0.000
PITC_015280
Penicillium italicum
PITC_015280
N
0.000
PMAA_045840
Penicillium marneffei
PMAA_045840
N
0.000
PMAA_045840
Talaromyces marneffei
PMAA_045840
N
0.000
PODANS_5_9700
Podospora anserina
PODANS_5_9700
I
0.000
PV04_04067
Capronia semiimmersa
PV04_04067
N
0.000
PVAR5_5474
Byssochlamys spectabilis
PVAR5_5474
N
0.000
S40285_04496
Stachybotrys chlorohalonata
S40285_04496
I
0.000
S40288_04125
Stachybotrys chartarum
S40288_04125
I
0.000
SAPIO_CDS3835
Scedosporium apiospermum
SAPIO_CDS3835
I
0.000
SBOR_8128
Sclerotinia borealis
SBOR_8128
I
0.000
SMAC_09353
Sordaria macrospora
SMAC_09353
I
0.000
TEQG_00925
Trichophyton equinum
TEQG_00925
N
0.000
TESG_06256
Trichophyton tonsurans
TESG_06256
N
0.000
THITE_2050890
Thielavia terrestris
THITE_2050890
I
0.000
TRIATDRAFT_37495
Trichoderma atroviride
TRIATDRAFT_37495
I
0.000
TRIREDRAFT_51907
Trichoderma reesei
TRIREDRAFT_51907
I
0.000
TRIVIDRAFT_114564
Trichoderma virens
TRIVIDRAFT_114564
I
0.000
TRV_03240
Trichophyton verrucosum
TRV_03240
N
0.000
TSTA_035080
Talaromyces stipitatus
TSTA_035080
N
0.000
U727_00431251121
Penicillium solitum
U727_00431251121
N
0.000
UCRNP2_2614
Neofusicoccum parvum
UCRNP2_2614
N
0.000
UREG_06856
Uncinocarpus reesii
UREG_06856
N
0.000
UV8b_6210
Ustilaginoidea virens
UV8b_6210
I
0.000
VDAG_09925
Verticillium dahliae
VDAG_09925
I
0.000
VHEMI08584
Torrubiella hemipterigena
VHEMI08584
I
0.000
W97_03128
Coniosporium apollinis
W97_03128
N
0.000
X797_001395
Metarhizium robertsii
X797_001395
I
0.000