CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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pfk
(
Drosophila melanogaster
)
Pipsqueak
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF05225 (HTH_psq)
IPR007889
FBgn0035405
T313656_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including central brain anlage; embryonic brain; extended germ band embryo; gonad; and larval ventral nerve cord. [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
pfk
M06442_2.00
Drosophila melanogaster
GGAAYRNTKGGAWKK
MMWTCCMANYRTTCC
B1H
Zhu et al.(2011)
pfk_SANGER_5_FBgn0035405
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
For this family, TFs with SR scores >
0.778
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
FBpp0072891
Pipsqueak
348
392
INDALDLAADAVIIEGLSLQKAADRFDISKTVLWRRVRTNPAYMR
FBpp0072891
Pipsqueak
457
501
LRDKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRRTTSQN
FBpp0072892
Pipsqueak
342
386
INDALDLAADAVIIEGLSLQKAADRFDISKTVLWRRVRTNPAYMR
FBpp0072892
Pipsqueak
451
495
LRDKLAKAVHACLNEGMSQNHAANLFEIPKSTLWRHLQRRTTSQN
Links
Other
Pipsqueak
family TFs
Other
Drosophila melanogaster
TFs
6 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy