Aqu1.223491 (Amphimedon queenslandica)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 Aqu1.223491 T318013_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RFX4
M02448_2.00
Cavia porcellus
GTHDYYNNGN

NCNNRRHDAC
PBM
Weirauch et al.(2014)
pTH9249
0.721 0.667
Rfx4
M00186_2.00
Mus musculus
GTHDYYNNSN

NSNNRRHDAC
PBM
Badis et al.(2009)
Rfx4_3761
0.721 0.667
RFX4
M03456_2.00
Homo sapiens
NGTWRYCATRGHWACN

NGTWDCYATGRYWACN
SELEX
Jolma et al.(2013)
RFX4_1
0.721 0.667
RFX4
M03457_2.00
Homo sapiens
NGTTGCYRRGCAACS

SGTTGCYYRGCAACN
SELEX
Jolma et al.(2013)
RFX4_2
0.721 0.667
RFX4
M05721_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX4_eDBD_HT-SELEX
0.721 0.667
RFX4
M05722_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX4_eDBD_Methyl-HT-SELEX
0.721 0.667
Rfx
M03959_2.00
Drosophila melanogaster
NGTHRCYATRGYDACN

NGTHRCYATRGYDACN
SELEX
Nitta et al.(2015)
Rfx_1
0.691 0.603
Rfx
M03960_2.00
Drosophila melanogaster
GTTGCTARGCAAC

GTTGCYTAGCAAC
SELEX
Nitta et al.(2015)
Rfx_2
0.691 0.603
Rfx
M03961_2.00
Drosophila melanogaster
BGTWRCCATGGYWACV

BGTWRCCATGGYWACV
SELEX
Nitta et al.(2015)
Rfx_3
0.691 0.603
Rfx
M03962_2.00
Drosophila melanogaster
GTTRCYAWTRGYAAC

GTTRCYAWTRGYAAC
SELEX
Nitta et al.(2015)
Rfx_4
0.691 0.603
Rfx
M03963_2.00
Drosophila melanogaster
GTTGCTARGCAAC

GTTGCYTAGCAAC
SELEX
Nitta et al.(2015)
Rfx_5
0.691 0.603
Rfx6
M09365_2.00
Mus musculus
BDGTWKCYNDG

CHNRGMAACHV
Misc
Kulakovskiy et al.(2013)
RFX6_MOUSE.H11MO.0.C
0.690 0.615
GB41876
M02453_2.00
Apis mellifera
GTHDCYANVN

NBNTRGHDAC
PBM
Weirauch et al.(2014)
pTH9226
0.687 0.577
XP_002157607.1
M02456_2.00
Hydra magnipapillata
GTHDYYDNVN

NBNHRRHDAC
PBM
Weirauch et al.(2014)
pTH9199
0.687 0.577
RFX1
M02447_2.00
Anolis carolinensis
GTHRCYANGN

NCNTRGYDAC
PBM
Weirauch et al.(2014)
pTH9223
0.686 0.590
RFX1
M02451_2.00
Tetraodon nigroviridis
GTHDYYANGN

NCNTRRHDAC
PBM
Weirauch et al.(2014)
pTH9385
0.686 0.590
RFX1
M05723_2.00
Homo sapiens
BGTTRYCATGRYAACV

BGTTRYCATGRYAACV
SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX
0.686 0.590
Rfx1
M08162_2.00
Mus musculus
GTTGCYADGGNRAC

GTYNCCHTRGCAAC
ChIP-seq
Mathelier et al.(2014)
MA0509.1
0.686 0.590
RFX1
M09363_2.00
Homo sapiens
BBBSSNGTTGCCADGGNRMCVV

BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B
0.686 0.590
Rfx1
M09367_2.00
Mus musculus
BBBSSNGTTGCCADGGNRMCVV

BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A
0.686 0.590
RFX1
M11245_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EFC_Q6
0.686 0.590
RFX1
M11246_2.00
Homo sapiens
HNGTTRCYWVGYDMYNN

NNRKHRCBWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_01
0.686 0.590
RFX1
M11247_2.00
Homo sapiens
HNGTTRCYWBVGYDMYNN

NNRKHRCBVWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_02
0.686 0.590
RFX1
M11248_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX1_Q6
0.686 0.590
RFX1
M05724_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX
0.686 0.590
Sjc_0102030
M02455_2.00
Schistosoma japonicum
GTTRCYANG

CNTRGYAAC
PBM
Weirauch et al.(2014)
pTH9285
0.685 0.551
G4VLF2_SCHMA
M02452_2.00
Schistosoma mansoni
GTTGCTAD

HTAGCAAC
PBM
Weirauch et al.(2014)
pTH8587
0.685 0.551
Rfx3
M00188_2.00
Mus musculus
SNTRRHDACN

NGTHDYYANS
PBM
Badis et al.(2009)
Rfx3_3961
0.684 0.577
Rfx3
M03463_2.00
Mus musculus
SGTTRCCATGGYAACS

SGTTRCCATGGYAACS
SELEX
Jolma et al.(2013)
Rfx3_1
0.684 0.577
Rfx3
M09368_2.00
Mus musculus
BBGTTGCCATGGNRAC

GTYNCCATGGCAACVV
Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C
0.684 0.577
RFX2
M02449_2.00
Homo sapiens
BGTHRYYADG

CHTRRYDACV
PBM
Weirauch et al.(2014)
pTH9194
0.682 0.564
RFX2
M02450_2.00
Ornithorhynchus anatinus
NGTHRYYANV

BNTRRYDACN
PBM
Weirauch et al.(2014)
pTH9269
0.682 0.564
PHUM046580
M02454_2.00
Pediculus humanus
NGTHDCYANV

BNTRGHDACN
PBM
Weirauch et al.(2014)
pTH9278
0.681 0.577
RFX3
M03452_2.00
Homo sapiens
NGTTRCCATGGHAACV

BGTTDCCATGGYAACN
SELEX
Jolma et al.(2013)
RFX3_1
0.679 0.564
RFX3
M03453_2.00
Homo sapiens
BGTTGCTARGCAACS

SGTTGCYTAGCAACV
SELEX
Jolma et al.(2013)
RFX3_2
0.679 0.564
RFX3
M02750_2.00
Homo sapiens
GTTRYYATGG

CCATRRYAAC
SELEX
Jolma et al.(2010)
RFX3_dimer
0.679 0.564
RFX3
M05715_2.00
Homo sapiens
NGTTRYYATRRYAACN

NGTTRYYATRRYAACN
SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1
0.679 0.564
RFX3
M05716_2.00
Homo sapiens
BGTTGCTARGCAACS

SGTTGCYTAGCAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2
0.679 0.564
RFX3
M09361_2.00
Homo sapiens
BGTTRCCATGGYRN

NYRCCATGGYAACV
Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B
0.679 0.564
RFX3
M09627_2.00
Homo sapiens
BNGTTGCCATGGCAAC

GTTGCCATGGCAACNV
Misc
Heinz et al.(2010)
K562-RFX3_SRA012198
0.679 0.564
RFX3
M05717_2.00
Homo sapiens
BGTTRYYATRRYAACV

BGTTRYYATRRYAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1
0.679 0.564
RFX3
M05718_2.00
Homo sapiens
BGTTGCTARGCAACV

BGTTGCYTAGCAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2
0.679 0.564
Rfx2
M03461_2.00
Mus musculus
BGTTRCCATGGYAACV

BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
Rfx2_1
0.678 0.551
Rfx2
M03462_2.00
Mus musculus
SGTTGCTARGCAACV

BGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
Rfx2_2
0.678 0.551
Rfx2
M05888_2.00
Mus musculus
NGTTRCYATGGHDAY

RTHDCCATRGYAACN
SMiLE-seq
Isakova et al.(2017)
RFX2
0.678 0.551
Rfx2
M09366_2.00
Mus musculus
NBYBGTYNCCMTGGCAACNSSS

SSSNGTTGCCAKGGNRACVRVN
Misc
Kulakovskiy et al.(2013)
RFX2_MOUSE.H11MO.0.A
0.678 0.551
daf-19
M00709_2.00
Caenorhabditis elegans
SGTTRCTADG

CHTAGYAACS
PBM
Narasimhan et al.(2015)
pTH10021
0.678 0.513
RFX2
M03454_2.00
Homo sapiens
BGTTRCCATGGYAACV

BGTTRCCATGGYAACV
SELEX
Jolma et al.(2013)
RFX2_1
0.677 0.551
RFX2
M03455_2.00
Homo sapiens
SGTTGCTARGCAACS

SGTTGCYTAGCAACS
SELEX
Jolma et al.(2013)
RFX2_2
0.677 0.551
RFX2
M05719_2.00
Homo sapiens
NGTWDYYATRRHWACN

NGTWDYYATRRHWACN
SELEX
Yin et al.(2017)
RFX2_eDBD_HT-SELEX
0.677 0.551
RFX2
M09362_2.00
Homo sapiens
YNGTTGCCATGGVRACVV

BBGTYBCCATGGCAACNR
Misc
Kulakovskiy et al.(2013)
RFX2_HUMAN.H11MO.0.A
0.677 0.551
RFX2
M09628_2.00
Homo sapiens
BGTTKCCATGGMAAC

GTTKCCATGGMAACV
Misc
Heinz et al.(2010)
LoVo-RFX2_GSE49402
0.677 0.551
RFX2
M05720_2.00
Homo sapiens
BGTTRCCATGRYAACV

BGTTRYCATGGYAACV
SELEX
Yin et al.(2017)
RFX2_eDBD_Methyl-HT-SELEX
0.677 0.551
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PAC:15722019 RFX 2 79

Links

Other RFX family TFs
Other Amphimedon queenslandica TFs

576 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
XP_002154129.1 Hydra magnipapillata XP_002154129.1 N 0.000
XP_002154853.1 Hydra magnipapillata XP_002154853.1 N 0.000
XP_002155192.1 Hydra magnipapillata XP_002155192.1 N 0.000
XP_002155711.1 Hydra magnipapillata XP_002155711.1 N 0.000
XP_002155761.1 Hydra magnipapillata XP_002155761.1 N 0.000
XP_002155809.1 Hydra magnipapillata XP_002155809.1 N 0.000
XP_002156150.1 Hydra magnipapillata XP_002156150.1 N 0.000
XP_002156495.1 Hydra magnipapillata XP_002156495.1 N 0.000
XP_002156543.1 Hydra magnipapillata XP_002156543.1 N 0.000
XP_002157104.1 Hydra magnipapillata XP_002157104.1 N 0.000
XP_002157245.1 Hydra magnipapillata XP_002157245.1 N 0.000
XP_002158342.1 Hydra magnipapillata XP_002158342.1 N 0.000
XP_002158687.1 Hydra magnipapillata XP_002158687.1 N 0.000
XP_002158960.1 Hydra magnipapillata XP_002158960.1 N 0.000
XP_002160147.1 Hydra magnipapillata XP_002160147.1 N 0.000
XP_002160437.1 Hydra magnipapillata XP_002160437.1 N 0.000
XP_002160801.1 Hydra magnipapillata XP_002160801.1 N 0.000
XP_002161179.1 Hydra magnipapillata XP_002161179.1 N 0.000
XP_002161349.1 Hydra magnipapillata XP_002161349.1 N 0.000
XP_002161759.1 Hydra magnipapillata XP_002161759.1 N 0.000
XP_002161786.1 Hydra magnipapillata XP_002161786.1 N 0.000
XP_002161840.1 Hydra magnipapillata XP_002161840.1 N 0.000
XP_002162389.1 Hydra magnipapillata XP_002162389.1 N 0.000
XP_002162414.1 Hydra magnipapillata XP_002162414.1 N 0.000
XP_002162415.1 Hydra magnipapillata XP_002162415.1 N 0.000
XP_002162420.1 Hydra magnipapillata XP_002162420.1 N 0.000
XP_002162644.1 Hydra magnipapillata XP_002162644.1 N 0.000
XP_002163066.1 Hydra magnipapillata XP_002163066.1 N 0.000
XP_002163144.1 Hydra magnipapillata XP_002163144.1 N 0.000
XP_002163280.1 Hydra magnipapillata XP_002163280.1 N 0.000
XP_002163476.1 Hydra magnipapillata XP_002163476.1 N 0.000
XP_002164079.1 Hydra magnipapillata XP_002164079.1 N 0.000
XP_002164334.1 Hydra magnipapillata XP_002164334.1 N 0.000
XP_002164436.1 Hydra magnipapillata XP_002164436.1 N 0.000
XP_002164515.1 Hydra magnipapillata XP_002164515.1 N 0.000
XP_002164950.1 Hydra magnipapillata XP_002164950.1 N 0.000
XP_002165090.1 Hydra magnipapillata XP_002165090.1 N 0.000
XP_002165094.1 Hydra magnipapillata XP_002165094.1 N 0.000
XP_002165096.1 Hydra magnipapillata XP_002165096.1 N 0.000
XP_002166625.1 Hydra magnipapillata XP_002166625.1 N 0.000
XP_002166730.1 Hydra magnipapillata XP_002166730.1 N 0.000
XP_002166851.1 Hydra magnipapillata XP_002166851.1 N 0.000
XP_002166948.1 Hydra magnipapillata XP_002166948.1 N 0.000
XP_002167036.1 Hydra magnipapillata XP_002167036.1 N 0.000
XP_002167896.1 Hydra magnipapillata XP_002167896.1 N 0.000
XP_002168024.1 Hydra magnipapillata XP_002168024.1 N 0.000
XP_002168340.1 Hydra magnipapillata XP_002168340.1 N 0.000
XP_002170421.1 Hydra magnipapillata XP_002170421.1 N 0.000