ACLA_009440 (Aspergillus clavatus)
RFX

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02257 (RFX_DNA_binding) IPR003150 CADACLAG00001004 T318033_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RFX1
M00066_2.00
Saccharomyces cerevisiae
NSGTTGCYAN

NTRGCAACSN
PBM
Badis et al.(2008)
RFX1_4537
0.675 0.449
RFX1
M07494_2.00
Saccharomyces cerevisiae
BGTTRCYA

TRGYAACV
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0365.1
0.675 0.449
RFX1
M08600_2.00
Saccharomyces cerevisiae
CGTYRBYAYRGYWACM

KGTWRCYRTRVYRACG
Misc
DeBoer et al.(2011)
YLR176C_1478
0.675 0.449
RFX1
M08601_2.00
Saccharomyces cerevisiae
BGTTRCYA

TRGYAACV
Misc
DeBoer et al.(2011)
YLR176C_496
0.675 0.449
RFX1
M11251_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$RFX1_02
0.675 0.449
daf-19
M00709_2.00
Caenorhabditis elegans
SGTTRCTADG

CHTAGYAACS
PBM
Narasimhan et al.(2015)
pTH10021
0.654 0.423
XP_002157607.1
M02456_2.00
Hydra magnipapillata
GTHDYYDNVN

NBNHRRHDAC
PBM
Weirauch et al.(2014)
pTH9199
0.653 0.397
GB41876
M02453_2.00
Apis mellifera
GTHDCYANVN

NBNTRGHDAC
PBM
Weirauch et al.(2014)
pTH9226
0.653 0.397
Rfx3
M00188_2.00
Mus musculus
SNTRRHDACN

NGTHDYYANS
PBM
Badis et al.(2009)
Rfx3_3961
0.652 0.397
Rfx3
M03463_2.00
Mus musculus
SGTTRCCATGGYAACS

SGTTRCCATGGYAACS
SELEX
Jolma et al.(2013)
Rfx3_1
0.652 0.397
Rfx3
M09368_2.00
Mus musculus
BBGTTGCCATGGNRAC

GTYNCCATGGCAACVV
Misc
Kulakovskiy et al.(2013)
RFX3_MOUSE.H11MO.0.C
0.652 0.397
G4VLF2_SCHMA
M02452_2.00
Schistosoma mansoni
GTTGCTAD

HTAGCAAC
PBM
Weirauch et al.(2014)
pTH8587
0.651 0.385
Sjc_0102030
M02455_2.00
Schistosoma japonicum
GTTRCYANG

CNTRGYAAC
PBM
Weirauch et al.(2014)
pTH9285
0.651 0.385
RFX1
M02447_2.00
Anolis carolinensis
GTHRCYANGN

NCNTRGYDAC
PBM
Weirauch et al.(2014)
pTH9223
0.650 0.397
RFX1
M02451_2.00
Tetraodon nigroviridis
GTHDYYANGN

NCNTRRHDAC
PBM
Weirauch et al.(2014)
pTH9385
0.650 0.397
RFX1
M05723_2.00
Homo sapiens
BGTTRYCATGRYAACV

BGTTRYCATGRYAACV
SELEX
Yin et al.(2017)
RFX1_eDBD_HT-SELEX
0.650 0.397
Rfx1
M08162_2.00
Mus musculus
GTTGCYADGGNRAC

GTYNCCHTRGCAAC
ChIP-seq
Mathelier et al.(2014)
MA0509.1
0.650 0.397
RFX1
M09363_2.00
Homo sapiens
BBBSSNGTTGCCADGGNRMCVV

BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_HUMAN.H11MO.0.B
0.650 0.397
Rfx1
M09367_2.00
Mus musculus
BBBSSNGTTGCCADGGNRMCVV

BBGKYNCCHTGGCAACNSSVVV
Misc
Kulakovskiy et al.(2013)
RFX1_MOUSE.H11MO.0.A
0.650 0.397
RFX1
M11245_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$EFC_Q6
0.650 0.397
RFX1
M11246_2.00
Homo sapiens
HNGTTRCYWVGYDMYNN

NNRKHRCBWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_01
0.650 0.397
RFX1
M11247_2.00
Homo sapiens
HNGTTRCYWBVGYDMYNN

NNRKHRCBVWRGYAACND
Transfac
Matys et al.(2006)
V$RFX1_02
0.650 0.397
RFX1
M11248_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$RFX1_Q6
0.650 0.397
RFX1
M05724_2.00
Homo sapiens
BGTWRYCATGRYWACV

BGTWRYCATGRYWACV
SELEX
Yin et al.(2017)
RFX1_eDBD_Methyl-HT-SELEX
0.650 0.397
RFX2
M02449_2.00
Homo sapiens
BGTHRYYADG

CHTRRYDACV
PBM
Weirauch et al.(2014)
pTH9194
0.650 0.372
RFX2
M02450_2.00
Ornithorhynchus anatinus
NGTHRYYANV

BNTRRYDACN
PBM
Weirauch et al.(2014)
pTH9269
0.650 0.372
RFX3
M03452_2.00
Homo sapiens
NGTTRCCATGGHAACV

BGTTDCCATGGYAACN
SELEX
Jolma et al.(2013)
RFX3_1
0.650 0.397
RFX3
M03453_2.00
Homo sapiens
BGTTGCTARGCAACS

SGTTGCYTAGCAACV
SELEX
Jolma et al.(2013)
RFX3_2
0.650 0.397
RFX3
M02750_2.00
Homo sapiens
GTTRYYATGG

CCATRRYAAC
SELEX
Jolma et al.(2010)
RFX3_dimer
0.650 0.397
RFX3
M05715_2.00
Homo sapiens
NGTTRYYATRRYAACN

NGTTRYYATRRYAACN
SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_1
0.650 0.397
RFX3
M05716_2.00
Homo sapiens
BGTTGCTARGCAACS

SGTTGCYTAGCAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_HT-SELEX_2
0.650 0.397
RFX3
M09361_2.00
Homo sapiens
BGTTRCCATGGYRN

NYRCCATGGYAACV
Misc
Kulakovskiy et al.(2013)
RFX3_HUMAN.H11MO.0.B
0.650 0.397
RFX3
M09627_2.00
Homo sapiens
BNGTTGCCATGGCAAC

GTTGCCATGGCAACNV
Misc
Heinz et al.(2010)
K562-RFX3_SRA012198
0.650 0.397
RFX3
M05717_2.00
Homo sapiens
BGTTRYYATRRYAACV

BGTTRYYATRRYAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_1
0.650 0.397
RFX3
M05718_2.00
Homo sapiens
BGTTGCTARGCAACV

BGTTGCYTAGCAACV
SELEX
Yin et al.(2017)
RFX3_eDBD_Methyl-HT-SELEX_2
0.650 0.397
For this family, TFs with SR scores > 0.650 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CADACLAP00000985 RFX 242 319

Links

Other RFX family TFs
Other Aspergillus clavatus TFs

457 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AB04375.1 Alternaria brassicicola AB04375.1 I 0.000
AOL_s00054g326 Arthrobotrys oligospora AOL_s00054g326 I 0.000
AUEXF2481DRAFT_4398 Aureobasidium subglaciale AUEXF2481DRAFT_4398 I 0.000
BAUCODRAFT_144230 Baudoinia compniacensis BAUCODRAFT_144230 I 0.000
ANIA_04077 Aspergillus nidulans CADANIAG00004604 I 0.000
ATEG_03075 Aspergillus terreus CADATEAG00010055 I 0.000
NFIA_019220 Neosartorya fischeri CADNFIAG00000884 I 0.000
CFIO01_11469 Colletotrichum fioriniae CFIO01_11469 I 0.000
CGGC5_5606 Colletotrichum gloeosporioides CGGC5_5606 I 0.000
CHGG_02890 Chaetomium globosum CHGG_02890 I 0.000
CIMG_03917 Coccidioides immitis CIMG_03917 I 0.000
Cob_12532 Colletotrichum orbiculare Cob_12532 I 0.000
COCC4DRAFT_126547 Bipolaris maydis COCC4DRAFT_126547 I 0.000
COCCADRAFT_37717 Bipolaris zeicola COCCADRAFT_37717 I 0.000
COCMIDRAFT_84665 Bipolaris oryzae COCMIDRAFT_84665 I 0.000
COCSADRAFT_102727 Bipolaris sorokiniana COCSADRAFT_102727 I 0.000
COCVIDRAFT_34345 Bipolaris victoriae COCVIDRAFT_34345 I 0.000
CPC735_004330 Coccidioides posadasii CPC735_004330 I 0.000
CTHT_0024110 Chaetomium thermophilum CTHT_0024110 I 0.000
DOTSEDRAFT_68166 Dothistroma septosporum DOTSEDRAFT_68166 I 0.000
DRE_01415 Drechslerella stenobrocha DRE_01415 I 0.000
EPUS_04985 Endocarpon pusillum EPUS_04985 I 0.000
estExt_Genewise1.C_50564 Neurospora discreta estExt_Genewise1.C_50564 I 0.000
EURHEDRAFT_458005 Aspergillus ruber EURHEDRAFT_458005 I 0.000
e_gw1.00129.236.1 Aspergillus carbonarius e_gw1.00129.236.1 I 0.000
F503_07914 Ophiostoma piceae uamh F503_07914 I 0.000
fgenesh1_pg.C_scaffold_1000989 Cryphonectria parasitica fgenesh1_pg.C_scaffold_1000989 I 0.000
GLRG_03674 Colletotrichum graminicola GLRG_03674 I 0.000
H072_1719 Dactylellina haptotyla H072_1719 I 0.000
H101_07436 Trichophyton interdigitale H101_07436 N 0.000
H102_07847 Trichophyton rubrum H102_07847 N 0.000
H105_07872 Trichophyton soudanense H105_07872 N 0.000
HCBG_06971 Histoplasma capsulatum HCBG_06971 I 0.000
HMPREF1624_06509 Sporothrix schenckii HMPREF1624_06509 N 0.000
LEMA_P018010.1 Leptosphaeria maculans LEMA_P018010.1 I 0.000
M437DRAFT_83473 Aureobasidium melanogenum M437DRAFT_83473 I 0.000
M438DRAFT_281095 Aureobasidium pullulans M438DRAFT_281095 I 0.000
MCYG_00903 Arthroderma otae MCYG_00903 I 0.000
MCYG_00903 Microsporum canis MCYG_00903 I 0.000
MPH_05713 Macrophomina phaseolina MPH_05713 I 0.000
MYCFIDRAFT_97410 Pseudocercospora fijiensis MYCFIDRAFT_97410 N 0.000
MYCTH_2304200 Myceliophthora thermophila MYCTH_2304200 I 0.000
NCU00392 Neurospora crassa NCU00392 D 0.000
NEUTE1DRAFT_137852 Neurospora tetrasperma NEUTE1DRAFT_137852 I 0.000
OIDMADRAFT_60194 Oidiodendron maius OIDMADRAFT_60194 I 0.000
PAAG_08645 Paracoccidioides sp lutzii PAAG_08645 I 0.000
PABG_02907 Paracoccidioides brasiliensis PABG_02907 I 0.000
Pc18g02200 Penicillium chrysogenum Pc18g02200 I 0.000
PCH_Pc18g02200 Penicillium rubens PCH_Pc18g02200 I 0.000
PDE_02765 Penicillium oxalicum PDE_02765 I 0.000
PDIP_73930 Penicillium digitatum PDIP_73930 I 0.000
PEX1_076370 Penicillium expansum PEX1_076370 I 0.000
PFICI_03782 Pestalotiopsis fici PFICI_03782 I 0.000
PITC_027910 Penicillium italicum PITC_027910 I 0.000
PMAA_024740 Talaromyces marneffei PMAA_024740 I 0.000
PMAA_024740 Penicillium marneffei PMAA_024740 I 0.000
PODANS_7_2090 Podospora anserina PODANS_7_2090 I 0.000
PTRG_00243 Pyrenophora triticirepentis PTRG_00243 I 0.000
PTT_13020 Pyrenophora teres PTT_13020 I 0.000
PV09_02665 Verruconis gallopava PV09_02665 I 0.000
PVAR5_6448 Byssochlamys spectabilis PVAR5_6448 I 0.000
SAPIO_CDS5850 Scedosporium apiospermum SAPIO_CDS5850 I 0.000
SBOR_2000 Sclerotinia borealis SBOR_2000 I 0.000
SEPMUDRAFT_146146 Sphaerulina musiva SEPMUDRAFT_146146 N 0.000
SETTUDRAFT_102560 Setosphaeria turcica SETTUDRAFT_102560 I 0.000
SMAC_08830 Sordaria macrospora SMAC_08830 I 0.000
SNOG_11811 Phaeosphaeria nodorum SNOG_11811 I 0.000
SPBR_00313 Sporothrix brasiliensis SPBR_00313 N 0.000
SS1G_06977 Sclerotinia sclerotiorum SS1G_06977 I 0.000
TEQG_01462 Trichophyton equinum TEQG_01462 N 0.000
THITE_2119520 Thielavia terrestris THITE_2119520 I 0.000
TSTA_033430 Talaromyces stipitatus TSTA_033430 I 0.000
U727_00431293291 Penicillium solitum U727_00431293291 I 0.000
UCRNP2_6191 Neofusicoccum parvum UCRNP2_6191 I 0.000
VDAG_06431 Verticillium dahliae VDAG_06431 I 0.000
W97_02650 Coniosporium apollinis W97_02650 I 0.000